Gene: AT5G44500

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G44500
  • Transcript Identifier AT5G44500.1
  • Gene Type Coding gene
  • Location Chr5 : 17927505-17928269 : positive

Gene Family Information

  • ID HOM05D004370
  • #Genes/#Species 164/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G44500.1
  • uniprot Q9FI15

Descriptions

  • Description Small nuclear ribonucleoprotein family protein
  • Computational description Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein associated protein B (TAIR:AT4G20440.4); Has 60118 Blast hits to 30363 proteins in 1233 species: Archae - 62; Bacteria - 7735; Metazoa - 31237; Fungi - 6515; Plants - 7441; Viruses - 1395; Other Eukaryotes - 5733 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus2
GO:0005829
RCA
Gene Ontologycytosol3
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005685
IBA
Gene OntologyU1 snRNP1
GO:0005687
IBA
Gene OntologyU4 snRNP1
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0071004
IBA
Gene OntologyU2-type prespliceosome1
GO:0005682
IBA
Gene OntologyU5 snRNP1
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR017131 Small ribonucleoprotein associated, SmB/SmN
IPR010920 LSM domain superfamily
Mapman id Description
16.2.2.1 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-B