Gene: Sopen01g038350

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g038350
  • Transcript Identifier Sopen01g038350.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 96224607-96225434 : negative

Gene Family Information

  • ID HOM05D004370
  • #Genes/#Species 164/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g038350.1

Descriptions

  • Description Small nuclear ribonucleoprotein family protein | FUNCTIONS IN: molecular_function unknown | LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex | EXPRESSED IN: 7 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Small ribonucleoprotein associated, SmB/SmN , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain | BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein associated protein B
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT4G20440

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT4G20440
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G20440
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G44500
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT4G20440

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010920 LSM domain superfamily
IPR001163 LSM domain, eukaryotic/archaea-type
IPR017131 Small ribonucleoprotein associated, SmB/SmN
Mapman id Description
16.2.2.1 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-B