Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Carub.0007s2072 K11086 - small nuclear ribonucleoprotein B and B' (SNRPB, SMB) scaffold_7 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G2820 LG-6 - View
Aethionema arabicum Aa31LG9G8700 LG-9 - View
Acer truncatum Atru.chr10.664 chr10 + View
Arabidopsis lyrata AL8G15320 scaffold_8 - View
Arabidopsis lyrata AL7G33430 scaffold_7 + View
Arabidopsis thaliana AT5G44500 Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: nucleolus%2C nucleus%2C small nucleolar ribonucleoprotein complex%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Small ribonucleoprotein associated%2C SmB/SmN (InterPro:IPR017131)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein associated protein B (TAIR:AT4G20440.4)%3B Has 60118 Blast hits to 30363 proteins in 1233 species: Archae - 62%3B Bacteria - 7735%3B Metazoa - 31237%3B Fungi - 6515%3B Plants - 7441%3B Viruses - 1395%3B Other Eukaryotes - 5733 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT4G20440 small nuclear ribonucleoprotein associated protein B small nuclear ribonucleoprotein associated protein B (smB)%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Small ribonucleoprotein associated%2C SmB/SmN (InterPro:IPR017131)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr4 - View
Brassica carinata BcaC09g51319 ChrC09 + View
Brassica carinata BcaC01g00671 ChrC01 - View
Brassica carinata BcaB03g11674 ChrB03 - View
Brassica napus C01p14450 C01 - View
Brassica napus A01p12130 A01 - View
Brassica napus C03p82950 C03 - View
Brassica napus A08p14890 A08 - View
Brassica napus A03p52450 A03 - View
Brassica oleracea BolC3t20578H C3 - View
Brassica oleracea BolC1t01401H C1 - View
Brassica rapa BraA01t01156Z A01 - View
Citrus clementina Ciclev10018122m.g scaffold_2 - View
Cardamine hirsuta CARHR227270 small nuclear ribonucleoprotein associated protein B Chr7 - View
Citrullus lanatus ClCG01G025430 Small nuclear ribonucleoprotein-associated protein CG_Chr01 + View
Cucumis melo MELO3C007041.2 Small nuclear ribonucleoprotein-associated protein chr08 - View
Cucumis sativus L. CsaV3_6G052680 Small nuclear ribonucleoprotein-associated protein chr6 + View
Eutrema salsugineum Thhalv10001000m.g K11086 - small nuclear ribonucleoprotein B and B' (SNRPB, SMB) scaffold_20 + View
Eutrema salsugineum Thhalv10026002m.g K11086 - small nuclear ribonucleoprotein B and B' (SNRPB, SMB) scaffold_1 + View
Gossypium hirsutum Gohir.A10G005600 K11086 - small nuclear ribonucleoprotein B and B' (SNRPB, SMB) A10 - View
Manihot esculenta Manes.06G060100 Chromosome06 - View
Manihot esculenta Manes.14G127000 Chromosome14 + View
Populus trichocarpa Potri.011G155700 K11086 - small nuclear ribonucleoprotein B and B' (SNRPB, SMB) Chr11 - View
Salix brachista Sabra11G0144100 GWHAAZH00000011 + View
Sechium edule Sed0027177 LG10 - View
Sechium edule Sed0020090 LG14 - View
Schrenkiella parvula Sp7g18800 K11086 - small nuclear ribonucleoprotein B and B' (SNRPB, SMB) ch7-4 - View
Tarenaya hassleriana THA.LOC104812077 small nuclear ribonucleoprotein-associated protein B'-like NW_010960187.1 + View
Tarenaya hassleriana THA.LOC104806243 small nuclear ribonucleoprotein-associated protein B NW_010962392.1 - View