Gene: Solyc05g049950.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc05g049950.3
  • Transcript Identifier Solyc05g049950.3.1
  • Gene Type Coding gene
  • Location SL4.0ch05 : 59175973-59178334 : positive

Gene Family Information

  • ID HOM05D004370
  • #Genes/#Species 164/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc05g049950.3.1
  • uniprot A0A3Q7GMS7
  • gene_id Solyc05g049950

Descriptions

  • Description Small nuclear ribonucleoprotein-associated protein (AHRD V3.3 *-* A0A2G2YXL6_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005682
IBA
GOA DatabaseU5 snRNP
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0005687
IBA
GOA DatabaseU4 snRNP
GO:0046540
IBA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT4G20440
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G20440
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G44500
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT4G20440

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010920 LSM domain superfamily
IPR017131 Small ribonucleoprotein associated, SmB/SmN
IPR001163 LSM domain, eukaryotic/archaea-type
Mapman id Description
16.2.2.1 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-B