Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.4e-76 288.9 156 100.0
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.1e-57 226.9 114 94.7
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 8.7e-55 217.2 114 89.5
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 8.1e-53 210.7 110 91.8
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 5.3e-52 208.0 115 84.3
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 4.5e-51 204.9 115 83.5
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.2e-50 202.6 114 83.3
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 4.9e-50 201.4 114 80.7
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 4.9e-50 201.4 114 81.6
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 2.4e-49 199.1 114 80.7
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 2.4e-49 199.1 114 82.5
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 3.2e-49 198.7 114 81.6
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 7.1e-49 197.6 114 80.7
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 9.3e-49 197.2 117 78.6
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 9.3e-49 197.2 129 72.9
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.6e-48 196.4 114 77.2
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.6e-48 196.4 114 77.2
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 2.1e-48 196.1 114 78.9
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 2.1e-48 196.1 114 78.9
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.1e-48 196.1 114 78.9
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 2.7e-48 195.7 114 78.1
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 2.7e-48 195.7 114 78.9
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 3.5e-48 195.3 114 78.9
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 4.6e-48 194.9 114 78.9
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.0e-47 193.7 114 77.2
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 1.0e-47 193.7 114 78.1
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 1.3e-47 193.4 114 77.2
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 1.3e-47 193.4 110 79.1
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.3e-47 193.4 114 77.2
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.3e-47 193.4 114 78.1
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.3e-47 193.4 113 76.1
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.8e-47 193.0 110 77.3
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 2.3e-47 192.6 114 77.2
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 2.3e-47 192.6 114 78.1
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 2.3e-47 192.6 114 77.2
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 2.3e-47 192.6 114 77.2
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 2.3e-47 192.6 114 76.3
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 3.0e-47 192.2 114 78.1
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 3.0e-47 192.2 114 78.1
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 3.0e-47 192.2 114 78.1
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 3.0e-47 192.2 114 76.3
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 3.0e-47 192.2 114 77.2
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.0e-47 192.2 114 78.1
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 3.9e-47 191.8 114 77.2
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 3.9e-47 191.8 114 77.2
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 5.1e-47 191.4 114 77.2
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 5.1e-47 191.4 114 77.2
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.5e-46 189.9 114 73.7
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 1.5e-46 189.9 117 73.5
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.9e-46 189.5 114 74.6
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 1.9e-46 189.5 115 76.5
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.5e-46 189.1 114 73.7
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.5e-46 189.1 114 78.1
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 4.3e-46 188.3 114 73.7
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 4.3e-46 188.3 114 73.7
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 4.3e-46 188.3 114 77.2
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 4.3e-46 188.3 117 74.4
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 5.6e-46 188.0 114 75.4
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 5.6e-46 188.0 114 75.4
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 5.6e-46 188.0 114 77.2
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 5.6e-46 188.0 114 77.2
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 5.6e-46 188.0 114 77.2
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 7.4e-46 187.6 114 73.7
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 7.4e-46 187.6 114 73.7
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 7.4e-46 187.6 114 73.7
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 7.4e-46 187.6 114 73.7
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 9.6e-46 187.2 114 73.7
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 9.6e-46 187.2 114 75.4
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 9.6e-46 187.2 114 75.4
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 9.6e-46 187.2 114 76.3
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 1.3e-45 186.8 129 66.7
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 1.3e-45 186.8 114 73.7
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.3e-45 186.8 114 74.6
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 1.6e-45 186.4 114 75.4
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 1.6e-45 186.4 130 70.0
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 1.6e-45 186.4 114 75.4
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 2.1e-45 186.0 114 74.6
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 2.1e-45 186.0 114 74.6
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 2.1e-45 186.0 114 72.8
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 3.7e-45 185.3 114 74.6
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 3.7e-45 185.3 114 74.6
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 3.7e-45 185.3 114 74.6
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 3.7e-45 185.3 114 74.6
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 4.8e-45 184.9 114 72.8
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 4.8e-45 184.9 114 72.8
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 4.8e-45 184.9 114 73.7
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 6.2e-45 184.5 114 71.9
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 6.2e-45 184.5 114 71.9
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 6.2e-45 184.5 114 71.9
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 6.2e-45 184.5 114 72.8
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 8.2e-45 184.1 119 71.4
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 8.2e-45 184.1 114 74.6
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 8.2e-45 184.1 115 75.7
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 1.1e-44 183.7 114 73.7
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.8e-44 183.0 114 73.7
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 2.4e-44 182.6 114 73.7
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 3.1e-44 182.2 114 71.1
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 4.0e-44 181.8 114 70.2
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 5.3e-44 181.4 114 70.2
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 1.2e-43 180.3 121 71.1
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 1.2e-43 180.3 114 72.8
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 1.2e-43 180.3 114 71.9
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.5e-43 179.9 114 71.9
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.6e-43 179.1 114 71.1
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 5.8e-43 177.9 114 71.1
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.3e-42 176.8 114 70.2
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.7e-42 176.4 144 60.4
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.9e-42 175.6 114 69.3
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 4.9e-42 174.9 114 68.4
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 4.9e-42 174.9 117 69.2
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 6.5e-42 174.5 146 58.9
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 1.4e-41 173.3 114 69.3
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 1.9e-41 172.9 114 72.8
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.2e-41 172.2 114 68.4
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 7.1e-41 171.0 114 70.2
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.1e-41 171.0 113 68.1
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 7.9e-40 167.5 114 69.3
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 8.7e-39 164.1 114 68.4
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 1.9e-38 162.9 128 60.9
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 7.4e-38 161.0 114 63.2
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.3e-37 160.2 126 58.7
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 4.8e-37 158.3 89 79.8
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.4e-36 156.8 114 63.2
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 1.0e-34 150.6 130 56.2
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 3.2e-33 145.6 85 76.5
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 5.5e-33 144.8 115 60.0
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 6.1e-32 141.4 85 76.5
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 8.2e-29 131.0 75 74.7
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 5.0e-26 121.7 85 67.1
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 5.5e-25 118.2 124 49.2
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 5.5e-25 118.2 63 82.5
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.1e-24 116.3 68 76.5
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.3e-23 112.8 69 73.9
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.7e-23 111.3 114 51.8
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 4.8e-21 105.1 114 48.2
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 5.9e-19 98.2 117 47.9
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 8.5e-18 94.4 116 43.1
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 2.1e-16 89.7 92 48.9
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 3.9e-15 85.5 50 78.0
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 6.7e-15 84.7 63 60.3
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 9.7e-14 80.9 51 72.5
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.1e-12 77.4 47 70.2
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 4.7e-08 62.0 37 67.6
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 3.0e-07 59.3 106 34.9
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 9.7e-06 54.3 75 37.3


User provided reference genes

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