Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 1.8e-241 839.0 460 100.0
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 3.3e-211 738.4 460 83.9
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 1.8e-196 689.5 460 81.1
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 1.9e-195 686.0 455 78.9
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 3.3e-195 685.3 469 79.1
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 5.9e-192 674.5 512 72.5
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 2.6e-187 659.1 451 79.4
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 2.8e-186 655.6 457 77.7
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.0e-180 637.1 452 74.3
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 8.8e-172 607.4 446 73.8
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 8.2e-170 600.9 454 70.5
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.5e-163 580.1 467 69.2
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 9.8e-163 577.4 467 70.4
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 1.3e-162 577.0 468 67.9
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 2.8e-162 575.9 467 70.7
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 4.1e-161 572.0 469 73.6
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 7.0e-161 571.2 467 70.0
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 5.9e-160 568.2 474 67.7
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 2.0e-155 553.1 461 66.4
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 3.7e-154 548.9 453 71.5
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 8.3e-154 547.7 471 65.4
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 8.3e-154 547.7 447 67.8
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 4.1e-153 545.4 443 67.0
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 1.6e-152 543.5 462 64.7
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 7.7e-152 541.2 443 70.2
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.7e-151 540.0 464 64.9
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 4.3e-150 535.4 445 67.6
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 2.1e-149 533.1 438 66.9
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 1.8e-148 530.0 449 65.5
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 2.3e-148 529.6 444 67.3
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 3.0e-148 529.3 458 65.1
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 5.2e-148 528.5 477 63.7
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 3.4e-147 525.8 440 65.9
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 1.7e-146 523.5 453 65.6
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.7e-146 523.5 439 67.4
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 1.7e-146 523.5 451 65.4
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.4e-145 520.4 438 64.8
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 4.1e-145 518.8 459 64.3
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 9.2e-145 517.7 436 64.2
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 1.2e-144 517.3 462 63.4
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.0e-144 516.5 455 63.1
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 2.0e-144 516.5 476 62.4
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 7.8e-144 514.6 449 64.8
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 1.3e-143 513.8 452 65.7
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.3e-143 513.1 451 62.1
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 3.9e-143 512.3 465 59.1
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 4.3e-142 508.8 437 68.6
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 5.6e-142 508.4 445 64.9
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 5.6e-142 508.4 444 64.9
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 1.2e-141 507.3 435 69.2
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 3.1e-140 502.7 433 63.3
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 1.3e-138 497.3 435 66.4
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 4.9e-138 495.4 440 61.4
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 6.4e-138 495.0 443 65.7
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 1.1e-137 494.2 436 61.9
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 2.4e-137 493.0 437 63.4
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 2.0e-136 490.0 434 59.9
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 2.0e-136 490.0 446 65.5
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 6.0e-136 488.4 464 57.1
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 1.7e-135 486.9 464 58.4
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 2.3e-135 486.5 451 58.8
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 6.6e-135 485.0 448 62.3
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.9e-134 483.4 448 60.0
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 7.3e-134 481.5 442 63.3
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 1.2e-133 480.7 433 59.6
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 2.8e-133 479.6 423 65.7
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 4.7e-133 478.8 434 65.4
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 6.2e-133 478.4 437 61.6
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 1.8e-132 476.9 464 61.0
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 2.3e-132 476.5 438 62.6
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 6.8e-132 474.9 434 62.2
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 8.9e-132 474.6 433 62.8
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.5e-131 473.8 437 64.8
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 3.7e-130 469.2 434 61.5
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 1.4e-129 467.2 452 59.5
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 5.4e-129 465.3 442 62.0
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 1.2e-128 464.2 440 59.5
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 2.1e-128 463.4 472 55.9
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 2.1e-128 463.4 449 57.9
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 6.6e-127 458.4 468 56.2
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 2.1e-125 453.4 451 59.6
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 1.1e-124 451.1 439 62.4
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 3.8e-122 442.6 604 47.7
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 6.0e-120 435.3 407 61.7
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 4.6e-112 409.1 392 61.5
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 6.0e-112 408.7 344 66.6
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.3e-111 407.5 377 63.4
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 2.5e-110 403.3 354 64.4
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 3.1e-108 396.4 375 62.4
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 5.8e-107 392.1 443 51.9
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 4.6e-104 382.5 397 54.2
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.8e-103 380.6 315 63.8
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 3.9e-103 379.4 339 64.3
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 4.8e-101 372.5 366 62.0
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 6.2e-93 345.5 345 60.3
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 3.4e-91 339.7 304 66.1
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 4.5e-83 312.8 405 45.4
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.9e-81 307.4 388 47.7
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 2.8e-77 293.5 262 64.9
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 1.5e-75 287.7 271 59.8
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 3.4e-75 286.6 307 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 5.9e-75 285.8 327 54.1
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.1e-68 263.1 423 41.1
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 5.0e-58 229.6 130 89.2
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 3.2e-57 226.9 190 60.5
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 1.4e-55 221.5 622 34.6
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 4.4e-54 216.5 274 45.6
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 7.5e-54 215.7 328 45.7
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.5e-49 201.4 355 42.0
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 7.7e-43 179.1 98 87.8
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 3.8e-42 176.8 110 82.7
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.0e-42 176.4 147 62.6
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 9.5e-41 172.2 97 84.5
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 2.1e-40 171.0 102 81.4
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 5.7e-38 162.9 251 46.6
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 9.2e-28 129.0 176 53.4
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 2.0e-27 127.9 179 46.9
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.9e-25 121.3 97 62.9
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 2.6e-22 110.9 102 55.9
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.1e-20 105.5 340 28.8
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 5.4e-20 103.2 111 53.2
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 9.2e-20 102.4 64 81.2
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.7e-19 100.9 110 47.3
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 8.1e-16 89.4 45 86.7
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.4e-15 88.6 92 47.8
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 5.8e-14 83.2 49 79.6
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 5.8e-14 83.2 49 79.6
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.1e-12 79.0 83 47.0
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 4.1e-12 77.0 52 67.3
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 1.7e-10 71.6 56 58.9
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 2.5e-09 67.8 56 57.1
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 4.7e-08 63.5 33 87.9
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 8.1e-08 62.8 43 69.8
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 8.1e-08 62.8 50 62.0
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 2.4e-07 61.2 80 45.0
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 2.4e-07 61.2 111 37.8
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 6.8e-07 59.7 41 73.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 5.8e-06 56.6 59 49.2
VMungo1383G0064 Vigna mungo HOM05D005431 ORTHO05D006762 5.8e-06 56.6 47 63.8


User provided reference genes

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