Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.3e-100 369.8 198 100.0
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 2.5e-46 189.5 216 53.7
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 5.1e-44 181.8 207 52.7
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 8.8e-44 181.0 238 47.9
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 7.4e-43 177.9 219 50.7
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.3e-42 177.2 245 46.9
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 1.8e-41 173.3 215 52.1
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 4.1e-41 172.2 223 49.8
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 2.2e-39 166.4 220 53.2
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 3.8e-39 165.6 201 54.7
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 5.5e-38 161.8 215 52.6
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 7.2e-38 161.4 211 47.9
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.2e-37 160.6 215 55.3
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.6e-37 160.2 184 51.6
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.7e-37 159.5 219 51.6
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 4.7e-37 158.7 221 48.9
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 6.1e-37 158.3 215 50.2
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 6.1e-37 158.3 217 48.4
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 7.9e-37 157.9 220 51.8
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 7.9e-37 157.9 218 50.9
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.0e-36 157.5 196 50.0
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.0e-36 157.5 196 50.0
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.4e-36 157.1 205 46.8
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 2.3e-36 156.4 224 47.3
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.1e-36 155.2 227 48.0
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 1.1e-35 154.1 168 54.8
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 2.0e-35 153.3 224 51.8
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 2.0e-35 153.3 171 53.8
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.3e-35 152.5 215 54.0
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 3.3e-35 152.5 221 51.1
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 5.7e-35 151.8 227 50.7
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 7.4e-35 151.4 196 49.0
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.3e-34 150.6 219 47.0
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.3e-34 150.6 219 47.0
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.7e-34 150.2 199 48.7
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 1.7e-34 150.2 217 50.7
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 2.2e-34 149.8 193 49.7
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 2.8e-34 149.4 223 50.7
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 3.7e-34 149.1 199 53.8
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 3.7e-34 149.1 222 45.9
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 8.2e-34 147.9 231 45.5
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 8.2e-34 147.9 201 45.3
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 1.4e-33 147.1 220 49.1
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 1.4e-33 147.1 218 49.5
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 2.4e-33 146.4 226 43.8
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 3.1e-33 146.0 193 49.7
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.1e-33 146.0 212 46.2
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 5.3e-33 145.2 185 48.1
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 9.1e-33 144.4 214 50.9
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 9.1e-33 144.4 194 50.5
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 2.6e-32 142.9 192 47.9
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.5e-32 142.5 245 44.1
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 7.7e-32 141.4 211 50.7
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 1.3e-31 140.6 206 48.5
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.2e-31 139.8 120 62.5
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 2.9e-31 139.4 206 49.0
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 1.1e-30 137.5 231 45.0
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 1.1e-30 137.5 225 49.3
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 1.1e-30 137.5 205 46.8
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.1e-30 137.5 166 50.6
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.5e-30 137.1 201 46.8
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 2.5e-30 136.3 212 44.3
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.5e-30 136.3 215 45.6
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 3.2e-30 136.0 117 61.5
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 5.5e-30 135.2 223 46.2
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 7.2e-30 134.8 229 42.8
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 7.2e-30 134.8 105 66.7
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 7.2e-30 134.8 120 62.5
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 7.2e-30 134.8 206 49.0
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 9.4e-30 134.4 111 63.1
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 9.4e-30 134.4 198 48.5
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.2e-29 134.0 221 41.2
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 1.6e-29 133.7 187 49.2
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.6e-29 133.7 209 46.4
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 2.1e-29 133.3 116 62.1
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 2.1e-29 133.3 116 62.1
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 2.1e-29 133.3 108 63.9
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 2.7e-29 132.9 108 63.9
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 4.7e-29 132.1 123 56.1
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 4.7e-29 132.1 130 56.9
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 6.1e-29 131.7 111 62.2
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 6.1e-29 131.7 111 62.2
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 6.1e-29 131.7 226 47.8
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 8.0e-29 131.3 116 59.5
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 1.0e-28 131.0 217 45.6
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.4e-28 130.6 98 68.4
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 1.8e-28 130.2 103 66.0
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.3e-28 129.8 103 65.0
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 2.3e-28 129.8 142 54.2
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 4.0e-28 129.0 220 47.7
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 5.2e-28 128.6 110 60.9
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 5.2e-28 128.6 112 62.5
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 5.2e-28 128.6 220 47.7
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 6.7e-28 128.3 230 40.4
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 6.7e-28 128.3 127 56.7
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 6.7e-28 128.3 196 44.9
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 6.7e-28 128.3 157 51.0
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 8.8e-28 127.9 98 67.3
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 8.8e-28 127.9 221 43.0
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.5e-27 127.1 165 47.9
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.5e-27 127.1 165 47.9
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 2.0e-27 126.7 98 66.3
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.0e-27 126.7 221 42.5
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 2.0e-27 126.7 227 42.3
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 2.6e-27 126.3 116 56.9
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.6e-27 126.3 226 42.0
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 3.3e-27 125.9 96 67.7
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 3.3e-27 125.9 64 87.5
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 3.3e-27 125.9 214 44.9
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 3.3e-27 125.9 208 42.8
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.4e-27 125.6 228 41.7
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.4e-27 125.6 228 41.7
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 4.4e-27 125.6 170 47.1
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 4.4e-27 125.6 107 60.7
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 5.7e-27 125.2 96 66.7
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 5.7e-27 125.2 96 66.7
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 5.7e-27 125.2 158 49.4
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 7.5e-27 124.8 204 46.6
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 7.5e-27 124.8 103 63.1
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 7.5e-27 124.8 227 47.1
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 9.7e-27 124.4 214 40.7
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 1.3e-26 124.0 215 40.9
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 1.7e-26 123.6 65 84.6
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 1.7e-26 123.6 217 46.1
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 2.8e-26 122.9 119 55.5
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.8e-26 122.9 106 61.3
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.8e-26 122.9 106 61.3
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 3.7e-26 122.5 147 49.7
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 6.3e-26 121.7 185 46.5
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 6.3e-26 121.7 192 45.3
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 8.2e-26 121.3 199 44.2
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.4e-25 120.6 118 55.1
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 2.4e-25 119.8 235 41.7
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 2.4e-25 119.8 198 48.0
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 3.1e-25 119.4 124 54.0
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 3.1e-25 119.4 124 54.0
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 3.1e-25 119.4 99 61.6
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 3.1e-25 119.4 118 55.9
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 5.3e-25 118.6 111 56.8
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.6e-24 117.1 179 45.3
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 1.6e-24 117.1 164 51.8
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 4.5e-24 115.5 208 40.9
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 5.9e-24 115.2 115 55.7
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 5.9e-24 115.2 194 42.8
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 5.9e-24 115.2 202 41.6
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 7.7e-24 114.8 111 55.0
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 7.7e-24 114.8 111 55.0
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.0e-23 114.4 118 55.9
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 1.3e-23 114.0 253 39.9
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.3e-23 114.0 118 55.1
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 2.9e-23 112.8 109 56.0
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 2.9e-23 112.8 188 46.3
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 2.9e-23 112.8 60 81.7
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 2.9e-23 112.8 221 41.6
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 3.8e-23 112.5 220 41.8
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.0e-23 112.1 182 44.0
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 1.9e-22 110.2 60 83.3
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 4.2e-22 109.0 56 87.5
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.6e-21 105.9 202 39.1
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 6.1e-21 105.1 190 46.3
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 2.0e-19 100.1 236 38.6
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.1e-17 94.4 192 39.1
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-16 90.1 81 61.7
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 3.5e-16 89.4 183 39.3
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 7.7e-16 88.2 210 40.5
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 8.5e-15 84.7 89 53.9
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 8.5e-15 84.7 89 53.9
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 4.2e-14 82.4 130 43.8
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 5.5e-14 82.0 43 81.4
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.2e-13 80.9 207 35.3
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 4.7e-13 79.0 98 50.0
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 1.7e-10 70.5 68 52.9
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.7e-10 70.5 144 38.9
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 2.0e-08 63.5 41 65.9
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 2.9e-07 59.7 104 38.5
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 8.6e-07 58.2 91 45.1


User provided reference genes

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