Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 2.4e-209 731.9 358 100.0
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 7.8e-192 673.7 361 92.0
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.2e-189 666.4 355 91.0
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 1.2e-189 666.4 348 92.0
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 2.1e-189 665.6 358 89.9
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 4.7e-189 664.5 355 90.7
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 2.3e-188 662.1 358 89.4
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 3.1e-188 661.8 356 89.6
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 4.0e-188 661.4 358 89.1
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 6.8e-188 660.6 359 89.4
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 2.2e-186 655.6 358 88.8
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.2e-186 655.6 351 90.9
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 2.9e-186 655.2 359 89.7
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 3.7e-186 654.8 351 89.5
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.4e-185 652.9 351 89.7
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 1.4e-185 652.9 351 89.7
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 3.2e-185 651.7 351 89.5
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 4.1e-185 651.4 358 87.7
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 4.1e-185 651.4 356 90.2
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 4.1e-185 651.4 408 80.9
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 5.4e-185 651.0 357 87.7
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 7.1e-185 650.6 355 87.6
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 9.2e-185 650.2 373 86.6
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 1.0e-183 646.7 347 89.0
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 3.9e-183 644.8 358 87.4
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 5.1e-183 644.4 347 88.8
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 5.1e-183 644.4 360 87.8
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 8.6e-183 643.7 415 78.8
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 1.2e-181 639.8 348 88.8
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 2.1e-181 639.0 348 88.8
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.1e-180 636.7 353 87.8
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 1.1e-180 636.7 354 87.9
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 1.1e-180 636.7 351 87.2
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.4e-180 636.3 353 86.7
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 3.1e-180 635.2 358 84.6
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 4.0e-180 634.8 358 85.8
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 6.8e-180 634.0 345 87.8
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 8.9e-180 633.6 345 87.8
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 2.6e-179 632.1 358 84.6
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 3.4e-179 631.7 358 84.6
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.7e-178 629.4 359 85.0
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 6.4e-178 627.5 359 83.8
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 2.7e-176 622.1 348 87.6
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 4.6e-176 621.3 335 90.4
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 3.9e-175 618.2 354 86.2
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 2.5e-174 615.5 366 81.7
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 5.6e-174 614.4 360 83.3
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.6e-174 614.4 335 90.7
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 9.6e-174 613.6 387 78.6
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.1e-173 612.5 351 85.8
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.1e-173 612.5 351 86.0
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 3.6e-173 611.7 376 79.5
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 3.6e-173 611.7 318 91.5
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 3.1e-172 608.6 348 84.5
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 5.2e-172 607.8 359 84.1
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.5e-171 606.3 365 80.3
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 3.4e-171 605.1 348 83.3
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 5.8e-171 604.4 363 81.3
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 1.7e-170 602.8 348 83.0
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 4.9e-170 601.3 345 83.8
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 4.9e-170 601.3 345 83.8
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 6.4e-170 600.9 394 75.6
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.4e-169 599.0 363 82.4
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 9.3e-169 597.0 359 81.6
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 2.1e-168 595.9 371 81.1
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 7.8e-168 594.0 351 81.8
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.0e-167 593.6 372 79.0
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 1.3e-167 593.2 352 81.5
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 3.3e-166 588.6 360 79.4
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 7.3e-166 587.4 356 79.2
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 6.2e-165 584.3 360 79.2
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.4e-164 583.2 417 72.2
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 1.2e-163 580.1 358 80.7
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 2.6e-163 578.9 348 81.3
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 7.6e-163 577.4 445 68.3
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 1.4e-161 573.2 324 85.2
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 8.7e-159 563.9 350 79.1
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.9e-158 562.8 326 83.1
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 2.4e-156 555.8 306 86.3
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 1.5e-155 553.1 323 79.6
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 2.0e-155 552.7 320 84.7
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 6.4e-154 547.7 334 76.3
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.9e-153 546.2 334 82.9
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 5.5e-153 544.7 364 74.7
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.6e-152 541.6 359 75.5
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 7.4e-150 534.3 355 77.5
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 7.4e-150 534.3 330 75.8
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 7.6e-147 524.2 353 75.6
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 4.2e-145 518.5 364 73.1
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 7.1e-145 517.7 384 68.5
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 2.3e-143 512.7 353 73.7
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 3.7e-141 505.4 356 70.5
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 1.1e-140 503.8 317 73.2
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.8e-140 503.1 354 72.6
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 2.4e-140 502.7 348 73.0
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 1.8e-135 486.5 310 72.9
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 3.8e-130 468.8 352 69.0
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 3.2e-129 465.7 259 84.9
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 7.2e-129 464.5 293 77.1
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 2.5e-121 439.5 324 63.0
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 7.2e-121 438.0 326 67.5
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 4.7e-120 435.3 238 87.4
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 3.0e-119 432.6 351 67.0
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 6.7e-119 431.4 348 60.9
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 4.8e-117 425.2 321 68.5
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 4.8e-117 425.2 221 91.4
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 8.2e-117 424.5 229 89.1
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 8.2e-117 424.5 229 89.1
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 1.1e-116 424.1 230 88.7
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 7.0e-116 421.4 348 65.5
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 5.0e-114 415.2 239 84.1
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 4.2e-113 412.1 231 85.7
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.4e-111 407.1 213 90.6
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 2.8e-109 399.4 226 86.3
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 6.8e-103 378.3 233 82.0
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 3.5e-99 365.9 439 46.5
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 1.2e-83 314.3 221 71.0
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 1.5e-70 270.8 202 69.3
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 1.1e-65 254.6 211 64.0
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 5.6e-65 252.3 354 44.6
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 1.7e-58 230.7 269 50.6
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 6.2e-56 222.2 129 82.2
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 1.1e-52 211.5 114 87.7
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 6.6e-50 202.2 117 82.1
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 7.6e-46 188.7 122 73.8
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 1.1e-41 174.9 94 86.2
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 1.5e-41 174.5 101 82.2
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 9.3e-36 155.2 83 85.5
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 5.6e-33 146.0 121 62.8
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 7.1e-28 129.0 70 88.6
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 9.3e-28 128.6 95 69.5
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.4e-23 114.8 77 72.7
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 1.1e-20 105.1 66 75.8
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 2.1e-19 100.9 71 71.8
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.5e-17 94.7 57 75.4
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.2e-16 90.9 60 73.3
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 1.9e-12 77.8 77 54.5
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 1.2e-11 75.1 54 70.4
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 4.7e-11 73.2 83 48.2
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 9.7e-09 65.5 31 90.3
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.7e-08 64.7 34 73.5
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 1.7e-08 64.7 44 68.2
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 4.1e-07 60.1 38 73.7
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 4.1e-07 60.1 38 73.7
PRCOL_00007051 Prasinoderma coloniale HOM05D002604 ORTHO05D003070 9.1e-07 58.9 188 26.1


User provided reference genes

Program Settings