Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 9.0e-277 956.4 535 100.0
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 5.0e-219 764.6 546 81.9
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.2e-217 760.0 543 79.4
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.3e-211 740.0 543 78.8
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.5e-210 736.5 544 78.7
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.9e-206 721.5 589 74.4
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.9e-206 721.5 589 74.4
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.7e-204 715.7 542 74.9
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.1e-202 710.3 543 76.4
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.2e-201 706.8 541 76.9
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.0e-200 703.7 544 74.6
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.0e-199 699.5 539 76.1
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.2e-196 690.3 543 73.5
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 1.0e-195 687.2 539 72.9
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 6.6e-195 684.5 554 71.1
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.5e-194 683.3 544 70.6
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 1.5e-194 683.3 543 71.5
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.2e-193 680.2 546 73.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.7e-193 678.3 542 74.5
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.1e-192 677.2 539 72.5
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.0e-191 672.9 546 71.1
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.6e-191 672.5 554 74.7
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 7.5e-191 671.0 549 72.7
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 9.9e-191 670.6 539 72.4
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.9e-190 669.1 542 73.8
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 3.0e-187 659.1 553 69.4
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.3e-186 654.4 532 71.4
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.8e-185 652.5 553 72.0
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 4.7e-185 651.7 576 70.7
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 8.1e-185 651.0 546 69.6
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 8.1e-185 651.0 546 71.8
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 2.9e-182 642.5 542 72.7
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.2e-181 639.0 546 68.1
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 4.1e-181 638.6 547 67.8
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.2e-180 637.1 545 68.8
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.2e-180 637.1 545 70.1
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 5.6e-178 628.2 546 66.8
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 9.6e-178 627.5 542 67.7
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 3.6e-177 625.5 546 66.1
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 6.2e-177 624.8 541 68.9
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.1e-176 624.0 544 67.8
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 6.9e-176 621.3 510 73.9
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 7.6e-175 617.8 493 72.0
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 9.9e-175 617.5 539 68.1
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.7e-174 616.7 553 70.5
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.4e-174 614.8 552 70.5
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.4e-173 613.6 545 68.6
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 4.6e-172 608.6 542 67.3
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-171 607.4 557 67.7
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.0e-171 607.4 549 69.6
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.0e-171 607.4 553 69.8
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.3e-171 606.3 540 68.0
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.5e-170 603.6 549 66.8
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.5e-170 603.6 532 68.2
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.5e-170 602.8 558 68.1
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 4.3e-170 602.1 483 76.4
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 5.6e-170 601.7 503 71.2
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.6e-169 600.1 544 68.2
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 9.0e-168 594.3 502 70.3
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 9.0e-168 594.3 568 64.4
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.6e-167 592.8 542 67.0
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 3.4e-167 592.4 543 69.6
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 9.9e-167 590.9 540 66.7
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.2e-166 589.7 360 87.5
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.9e-166 589.3 550 67.3
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.8e-166 589.0 540 64.3
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 6.4e-166 588.2 578 64.0
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 2.4e-165 586.3 543 63.4
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 2.4e-165 586.3 548 65.7
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 5.4e-165 585.1 514 70.8
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.6e-164 583.6 546 64.7
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.1e-161 571.2 586 60.1
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.1e-160 570.9 543 65.9
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 4.0e-160 568.9 512 69.7
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.0e-159 566.6 567 60.5
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.6e-159 566.2 553 63.8
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.2e-158 563.1 549 66.1
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 6.4e-158 561.6 544 64.2
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 3.2e-157 559.3 561 60.8
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.2e-157 558.9 563 60.6
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 3.9e-155 552.4 838 47.6
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.3e-153 547.4 541 59.0
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 2.8e-153 546.2 537 63.5
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 3.7e-153 545.8 550 65.8
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 6.2e-153 545.0 534 62.2
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 2.4e-152 543.1 546 58.6
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.1e-152 542.7 564 62.6
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 4.5e-151 538.9 514 67.1
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 7.6e-151 538.1 531 67.2
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 6.5e-150 535.0 562 59.4
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 2.5e-149 533.1 546 61.0
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.2e-149 532.7 579 58.0
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.5e-148 529.3 549 63.2
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.4e-144 516.5 548 61.7
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 3.1e-144 516.2 550 60.7
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 2.9e-142 509.6 531 64.0
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 8.5e-142 508.1 501 68.9
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.4e-141 507.3 549 61.9
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 7.2e-141 505.0 551 61.7
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 7.2e-141 505.0 551 61.7
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 2.1e-140 503.4 549 61.7
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 2.7e-140 503.1 551 61.3
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.9e-140 501.5 530 60.6
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.1e-138 497.7 544 61.8
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 2.8e-137 493.0 483 64.8
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 4.8e-137 492.3 544 61.2
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.4e-136 490.0 551 62.1
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 2.9e-134 483.0 540 55.6
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 3.8e-134 482.6 547 60.5
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.0e-134 482.3 540 56.9
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 5.0e-134 482.3 466 66.3
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.4e-133 480.7 547 60.7
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.7e-132 476.5 584 55.0
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.5e-130 470.7 561 59.7
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 2.6e-130 469.9 538 60.2
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.4e-128 464.2 470 66.4
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.8e-128 463.8 537 60.7
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.2e-124 451.1 550 57.1
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 7.4e-122 441.8 549 56.3
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.8e-120 437.2 364 76.9
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.0e-118 431.4 411 67.9
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.5e-117 427.6 533 56.7
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.5e-117 427.6 533 56.7
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.5e-117 426.8 558 49.3
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 9.7e-114 414.8 439 64.7
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 5.3e-112 409.1 558 49.6
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.2e-111 407.9 325 66.2
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 3.8e-110 402.9 323 80.2
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.4e-107 394.4 539 47.3
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-105 387.9 552 48.0
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.8e-105 386.7 552 48.4
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.8e-105 386.7 551 47.9
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.3e-105 385.2 552 48.4
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.4e-104 383.6 552 48.2
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 6.8e-99 365.5 420 56.0
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 5.7e-98 362.5 550 45.3
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 9.8e-98 361.7 517 52.0
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 9.2e-96 355.1 550 45.3
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.8e-90 335.9 345 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.4e-88 329.3 354 55.4
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.0e-86 325.1 368 67.1
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.0e-82 310.8 195 73.3
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.3e-73 281.6 369 61.5
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.1e-72 278.5 312 56.4
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.4e-67 261.5 311 46.6
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-63 247.7 504 39.9
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.5e-61 240.7 245 64.9
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 8.7e-46 189.1 175 74.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.5e-45 188.3 181 70.7
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-38 165.6 247 43.7
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.4e-35 155.2 221 53.4
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 9.0e-35 152.5 101 67.3
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.4e-32 145.2 315 35.2
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.9e-29 134.8 100 77.0
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 6.3e-28 129.8 208 51.4
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.4e-27 128.6 289 37.7
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 4.1e-27 127.1 171 55.6
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.1e-22 110.2 140 40.7
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.1e-19 100.5 110 61.8
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.5e-18 98.6 51 84.3
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.4e-18 97.4 243 40.7
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.4e-18 97.4 226 41.2
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 3.4e-18 97.4 57 82.5
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.4e-18 97.4 222 38.3
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-15 87.8 74 67.6
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-15 87.8 74 67.6
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 6.1e-15 86.7 54 63.0
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 5.1e-14 83.6 118 48.3
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.5e-13 82.0 97 56.7
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 5.7e-13 80.1 101 57.4
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.2e-12 78.2 98 55.1
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 2.4e-11 74.7 59 61.0
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.2e-10 72.4 102 49.0
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 5.5e-08 63.5 82 53.7
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 5.5e-08 63.5 186 38.7
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.5e-08 63.5 122 31.1
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 8.0e-07 59.7 65 53.8
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.8e-06 58.5 55 63.6
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 6.7e-06 56.6 520 26.3


User provided reference genes

Program Settings