Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 3.2e-204 715.3 490 100.0
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 2.9e-120 436.4 350 70.3
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 2.9e-112 409.8 382 65.2
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 8.6e-109 398.3 413 78.5
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.9e-108 397.1 363 68.3
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.9e-104 382.5 489 65.4
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 2.4e-103 380.2 342 62.3
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 4.2e-103 379.4 341 63.0
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 2.1e-102 377.1 339 66.1
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.3e-101 374.4 329 66.0
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 2.3e-101 373.6 478 58.4
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 3.9e-101 372.9 353 63.5
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 3.3e-100 369.8 492 65.7
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 2.8e-99 366.7 355 62.5
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.8e-99 365.9 339 64.9
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.7e-96 357.5 346 60.7
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 2.2e-96 357.1 343 63.8
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.1e-95 354.8 256 72.3
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 3.0e-93 346.7 355 59.7
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 5.1e-93 345.9 254 72.4
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 5.1e-93 345.9 352 56.8
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 8.7e-93 345.1 336 61.0
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 1.1e-92 344.7 342 59.9
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 2.5e-92 343.6 377 50.4
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 5.6e-92 342.4 298 60.7
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 7.4e-92 342.0 316 63.3
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.3e-91 341.3 317 63.1
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.3e-91 341.3 342 62.0
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 2.1e-91 340.5 350 59.7
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 1.1e-90 338.2 352 65.1
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.1e-90 338.2 354 57.6
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.4e-90 337.8 345 59.4
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 4.0e-90 336.3 368 57.3
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 5.3e-90 335.9 358 60.3
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 6.9e-90 335.5 484 52.7
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 9.0e-90 335.1 339 60.5
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 9.0e-90 335.1 235 74.5
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 9.0e-90 335.1 265 68.3
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 2.0e-89 334.0 290 66.2
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 2.0e-89 334.0 306 64.7
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 4.5e-89 332.8 309 60.8
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 2.2e-88 330.5 289 61.9
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.2e-88 330.5 326 60.7
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 2.2e-88 330.5 450 66.2
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 6.4e-88 328.9 240 73.3
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 1.4e-87 327.8 348 58.9
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 1.4e-87 327.8 352 61.4
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 1.9e-87 327.4 339 53.7
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.2e-87 326.6 321 62.6
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 4.2e-87 326.2 348 59.2
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 5.5e-87 325.9 280 65.7
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 7.1e-87 325.5 191 80.1
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.2e-86 324.7 312 58.3
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.6e-86 324.3 364 57.7
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 1.6e-86 324.3 351 58.1
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 2.1e-86 323.9 323 61.3
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.5e-86 323.2 254 67.3
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 3.5e-86 323.2 351 60.4
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 6.0e-86 322.4 343 59.5
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 7.9e-86 322.0 197 78.2
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 1.3e-85 321.2 345 54.2
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 5.1e-85 319.3 293 61.8
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 8.7e-85 318.5 344 59.0
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.1e-84 318.2 274 66.8
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.9e-84 317.4 294 60.2
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 2.5e-84 317.0 242 67.4
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 3.3e-84 316.6 356 55.9
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 5.6e-84 315.8 354 57.6
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.3e-83 314.7 245 69.8
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.3e-83 314.7 245 69.8
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 6.2e-83 312.4 245 69.8
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 6.2e-83 312.4 342 57.3
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.4e-82 311.2 242 69.4
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 2.6e-81 307.0 339 55.2
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 3.4e-81 306.6 313 61.0
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 9.3e-79 298.5 327 57.2
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 1.0e-77 295.0 352 54.0
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 4.3e-76 289.7 324 57.4
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 9.6e-76 288.5 269 64.3
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 1.8e-74 284.3 325 48.6
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 6.9e-74 282.3 252 62.3
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.6e-73 280.4 256 60.9
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 1.4e-71 274.6 244 63.5
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 7.2e-71 272.3 293 57.0
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 7.2e-71 272.3 360 52.8
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 9.3e-71 271.9 361 52.1
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 2.7e-70 270.4 253 64.4
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 7.9e-70 268.9 368 50.5
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 1.0e-69 268.5 359 50.4
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 1.8e-69 267.7 358 51.1
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.9e-68 264.2 364 49.7
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 2.2e-67 260.8 467 42.6
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 3.7e-67 260.0 240 60.4
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 6.3e-67 259.2 146 86.3
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 9.0e-66 255.4 297 53.5
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 1.4e-63 248.1 143 84.6
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 1.9e-63 247.7 187 66.8
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 6.7e-61 239.2 151 75.5
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.6e-57 227.3 165 64.8
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 3.8e-56 223.4 189 68.8
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 6.1e-54 216.1 129 82.9
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 5.3e-50 203.0 275 59.3
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 1.1e-47 195.3 209 46.4
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.0e-44 184.5 181 46.4
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 9.1e-42 175.6 202 45.0
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.7e-35 154.8 207 45.9
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.7e-35 154.8 182 44.0
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.3e-35 152.9 182 44.0
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.6e-33 148.3 213 37.6
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.3e-32 145.2 211 80.6
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 2.2e-32 144.4 119 65.5
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.9e-31 141.4 207 40.6
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.0e-29 134.0 92 71.7
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 7.0e-26 122.9 76 65.8
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 8.6e-16 89.4 44 84.1
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.9e-15 88.2 231 35.5
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 6.2e-14 83.2 46 73.9
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 4.0e-13 80.5 160 31.2
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 5.2e-13 80.1 45 82.2
CiPaw.13G042200 Carya illinoinensis HOM05D005462 ORTHO05D006718 1.4e-10 72.0 37 83.8
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 4.1e-10 70.5 147 67.3
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 9.2e-10 69.3 45 75.6
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 9.2e-10 69.3 37 86.5
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 1.7e-08 65.1 133 31.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 5.0e-08 63.5 43 69.8
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 5.0e-08 63.5 43 69.8
TWI14G0881 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 1.1e-07 62.4 111 38.7
Oeu045207.1 Olea europaea HOM05D000142 ORTHO05D001253 1.5e-07 62.0 115 38.3
Glyma.05G043200 Glycine max HOM05D000142 ORTHO05D001253 3.3e-07 60.8 94 42.6
TWI53G1090 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 3.3e-07 60.8 93 37.6
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.3e-07 60.5 33 84.8
TWI39G0379 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 4.3e-07 60.5 92 44.6
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 7.3e-07 59.7 136 30.9
Lj1g0026820 Lotus japonicus HOM05D000142 ORTHO05D001253 7.3e-07 59.7 110 38.2
Ah.08g218450 Amaranthus hybridus HOM05D000142 ORTHO05D001253 9.5e-07 59.3 101 39.6
Gohir.A03G075500 Gossypium hirsutum HOM05D000142 ORTHO05D001253 9.5e-07 59.3 92 38.0
HanXRQChr07g0199041 Helianthus annuus HOM05D000142 ORTHO05D001253 9.5e-07 59.3 101 39.6
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 1.2e-06 58.9 125 31.2
Medtr4g104470 Medicago truncatula HOM05D000142 ORTHO05D001253 1.2e-06 58.9 103 37.9
Lj4g0004340 Lotus japonicus HOM05D000142 ORTHO05D001253 1.6e-06 58.5 103 37.9
Phvul.009G171500 Phaseolus vulgaris HOM05D000142 ORTHO05D001253 1.6e-06 58.5 95 42.1
TPR.G37575 Trifolium pratense HOM05D000142 ORTHO05D001253 1.6e-06 58.5 83 42.2
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 2.1e-06 58.2 77 40.3
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 2.1e-06 58.2 133 29.3
MBI10_g26097_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D001253 2.1e-06 58.2 117 35.9
Hund23136 Selenicereus undatus HOM05D000285 ORTHO05D000241 2.1e-06 58.2 96 36.5
VMungo1309G2545 Vigna mungo HOM05D000142 ORTHO05D001253 2.1e-06 58.2 91 39.6
Haze_14774 Corylus avellana HOM05D000142 ORTHO05D001253 2.8e-06 57.8 89 42.7
Thhalv10010548m.g Eutrema salsugineum HOM05D000142 ORTHO05D007638 2.8e-06 57.8 111 33.3
TWI74G0749 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 2.8e-06 57.8 93 37.6
BcaB02g08574 Brassica carinata HOM05D000142 ORTHO05D007638 3.6e-06 57.4 116 35.3
Dinv33414 Davidia involucrata HOM05D000142 ORTHO05D001253 3.6e-06 57.4 99 41.4
Gohir.D03G102200 Gossypium hirsutum HOM05D000142 ORTHO05D001253 3.6e-06 57.4 92 37.0
Gorai.003G107700 Gossypium raimondii HOM05D000142 ORTHO05D001253 3.6e-06 57.4 92 37.0
Peaxi162Scf00582g00611 Petunia axillaris HOM05D000142 ORTHO05D007638 3.6e-06 57.4 125 28.8
THA.LOC104805315 Tarenaya hassleriana HOM05D000142 ORTHO05D001253 3.6e-06 57.4 112 35.7
VMungo1215G0101 Vigna mungo HOM05D000142 ORTHO05D001253 3.6e-06 57.4 96 41.7
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 4.7e-06 57.0 130 32.3
Gohir.D04G092400 Gossypium hirsutum HOM05D000142 ORTHO05D007638 4.7e-06 57.0 109 33.9
HanXRQChr14g0451091 Helianthus annuus HOM05D000142 ORTHO05D001253 4.7e-06 57.0 103 39.8
Prupe.5G162300 Prunus persica HOM05D000142 ORTHO05D001253 4.7e-06 57.0 159 32.1
Solyc10g086150.2 Solanum lycopersicum HOM05D000142 ORTHO05D001253 4.7e-06 57.0 117 36.8
Sopen10g035530 Solanum pennellii HOM05D000142 ORTHO05D001253 4.7e-06 57.0 117 36.8
PGSC0003DMG400017584 Solanum tuberosum HOM05D000142 ORTHO05D001253 4.7e-06 57.0 117 36.8
SGA_v2.0_scaffold16G07819 Striga asiatica HOM05D000037 ORTHO05D051382 4.7e-06 57.0 115 37.4
Aa31LG10G7450 Aethionema arabicum HOM05D000142 ORTHO05D007638 6.2e-06 56.6 118 33.1
ATR0751G214 Amborella trichopoda HOM05D000142 ORTHO05D001253 6.2e-06 56.6 116 37.1
BcaC02g09262 Brassica carinata HOM05D000142 ORTHO05D007638 6.2e-06 56.6 97 35.1
C04p40640 Brassica napus HOM05D000142 ORTHO05D007638 6.2e-06 56.6 97 35.1
Gohir.A04G055200 Gossypium hirsutum HOM05D000142 ORTHO05D007638 6.2e-06 56.6 111 32.4
unitig_26.g8808 Utricularia gibba HOM05D000111 ORTHO05D007645 6.2e-06 56.6 126 36.5
Ah.15g095520 Amaranthus hybridus HOM05D000142 ORTHO05D001253 8.1e-06 56.2 101 39.6
Carub.0008s1025 Capsella rubella HOM05D000142 ORTHO05D001253 8.1e-06 56.2 97 40.2
Lalb_Chr04g0248031 Lupinus albus HOM05D000285 ORTHO05D000241 8.1e-06 56.2 78 39.7
Lalb_Chr12g0201971 Lupinus albus HOM05D000142 ORTHO05D001253 8.1e-06 56.2 97 39.2
Oeu023837.1 Olea europaea HOM05D000142 ORTHO05D001253 8.1e-06 56.2 99 38.4
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 8.1e-06 56.2 125 33.6
TWI77G0952 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 8.1e-06 56.2 93 36.6
Zm00001eb306930 Zea mays HOM05D000142 ORTHO05D001253 8.1e-06 56.2 101 40.6


User provided reference genes

Program Settings