Gene: Sopen11g002610
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g002610
- Transcript Identifier Sopen11g002610.1
- Gene Type Coding gene
- Location Spenn-ch11 : 1362901-1371946 : negative
Gene Family Information
- ID HOM05D005462
- #Genes/#Species 140/94
- Phylogenetic origin
- ID ORTHO05D006718
- #Genes/#Species 139/93
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen11g002610.1
Descriptions
- Description pentatricopeptide (PPR) repeat-containing protein | FUNCTIONS IN: nucleotide binding, nucleic acid binding | LOCATED IN: chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Pentatricopeptide repeat , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009790 | ISO | PLAZA Integrative Orthology | embryo development | AT5G04810 |
| GO:0008380 | ISO | PLAZA Integrative Orthology | RNA splicing | AT5G04810 |
| GO:0009880 | ISO | PLAZA Integrative Orthology | embryonic pattern specification | AT5G04810 |
| GO:0048366 | ISO | PLAZA Integrative Orthology | leaf development | AT5G04810 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G04810 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G04810 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000504 | RNA recognition motif domain |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR033443 | Pentacotripeptide-repeat region of PRORP |
| IPR002885 | Pentatricopeptide repeat |
| IPR035979 | RNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |