Gene: Solyc11g006680.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g006680.3
  • Transcript Identifier Solyc11g006680.3.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 1323407-1332665 : negative

Gene Family Information

  • ID HOM05D005462
  • #Genes/#Species 140/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g006680.3.1
  • uniprot A0A3Q7IQK5
  • gene_id Solyc11g006680

Descriptions

  • Description Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2I0WCG1_9ASPA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009790
ISO
PLAZA Integrative Orthologyembryo development AT5G04810
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT5G04810
GO:0009880
ISO
PLAZA Integrative Orthologyembryonic pattern specification AT5G04810
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT5G04810

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G04810

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G04810

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR000504 RNA recognition motif domain
IPR002885 Pentatricopeptide repeat
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR033443 Pentacotripeptide-repeat region of PRORP
IPR035979 RNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated