Gene: arahy.Tifrunner.gnm1.ann1.LTKS6Y
General Information
Structural Information
- Species Arachis hypogaea
- Gene Identifier arahy.Tifrunner.gnm1.ann1.LTKS6Y
- Transcript Identifier arahy.Tifrunner.gnm1.ann1.LTKS6Y.1
- Gene Type Coding gene
- Location arahy.Tifrunner.gnm1.Arahy.12 : 64130355-64142222 : positive
Gene Family Information
- ID HOM05D005462
- #Genes/#Species 140/94
- Phylogenetic origin
- ID ORTHO05D006718
- #Genes/#Species 139/93
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id arahy.Tifrunner.gnm1.ann1.LTKS6Y.v1.0
- pacid 42600302
Descriptions
- Description PF00076//PF01535//PF13041//PF13812 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009790 | ISO | PLAZA Integrative Orthology | embryo development | AT5G04810 |
| GO:0008380 | ISO | PLAZA Integrative Orthology | RNA splicing | AT5G04810 |
| GO:0009880 | ISO | PLAZA Integrative Orthology | embryonic pattern specification | AT5G04810 |
| GO:0048366 | ISO | PLAZA Integrative Orthology | leaf development | AT5G04810 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G04810 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G04810 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002885 | Pentatricopeptide repeat |
| IPR000504 | RNA recognition motif domain |
| IPR035979 | RNA-binding domain superfamily |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR033443 | Pentacotripeptide-repeat region of PRORP |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |