Gene: Sopen10g035530

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g035530
  • Transcript Identifier Sopen10g035530.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 82047831-82049448 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g035530.1

Descriptions

  • Description 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B) - Nicotiana sylvestris (Wood tobacco), Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, poly(U) RNA binding | INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response | LOCATED IN: in 6 components | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT2G37220
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT2G37220
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G53460
GO:0043489
ISO
PLAZA Integrative OrthologyRNA stabilization AT3G53460
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT3G53460
GO:0006396
ISO
PLAZA Integrative OrthologyRNA processing AT3G53460
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT3G53460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G53460
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT3G53460
GO:0003676
IEA
InterPronucleic acid binding
GO:0008266
ISO
PLAZA Integrative Orthologypoly(U) RNA binding AT3G53460

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT3G53460
GO:0010319
ISO
PLAZA Integrative Orthologystromule AT2G37220
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G53460
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT2G37220
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT2G37220
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT2G37220
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G53460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.11.2.1 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP29)