Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 8.3e-270 933.3 544 100.0
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.3e-222 776.5 546 81.9
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 5.8e-215 751.1 545 78.3
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.1e-208 730.3 544 76.7
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.4e-207 725.3 546 77.5
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.3e-205 717.2 591 75.8
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.3e-205 717.2 591 75.8
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.6e-204 714.9 548 75.7
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 3.3e-202 708.8 546 78.2
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 4.8e-201 704.9 546 72.0
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.8e-200 703.0 556 75.9
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 2.4e-200 702.6 543 74.0
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 3.1e-200 702.2 547 74.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.0e-198 694.9 545 76.1
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.6e-196 689.9 545 74.9
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.0e-195 687.2 548 74.3
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-195 687.2 545 73.2
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.4e-192 676.8 542 73.1
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.4e-192 676.0 558 78.7
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 5.3e-192 674.9 543 71.6
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 6.9e-192 674.5 556 73.4
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 9.1e-192 674.1 551 72.4
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.4e-189 666.8 547 75.5
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.2e-188 663.7 546 76.9
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.6e-188 663.3 546 73.8
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 6.1e-188 661.4 543 70.0
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 4.4e-186 655.2 544 71.7
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 2.2e-185 652.9 546 72.7
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 6.3e-185 651.4 551 71.7
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 4.1e-184 648.7 545 70.3
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 9.1e-184 647.5 555 71.7
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.7e-182 643.3 546 68.7
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.2e-182 642.9 546 71.1
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.1e-181 640.6 545 69.9
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.4e-181 640.2 532 69.2
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 4.2e-181 638.6 549 70.1
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.0e-179 634.0 555 73.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.4e-179 633.6 555 73.3
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 6.7e-179 631.3 547 69.8
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.1e-178 630.6 579 69.3
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 3.3e-178 629.0 543 69.4
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 3.3e-178 629.0 546 68.5
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 7.4e-178 627.9 546 71.4
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.4e-176 623.6 555 72.6
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.8e-176 623.2 545 71.9
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 7.0e-176 621.3 557 70.4
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 9.1e-176 620.9 530 73.2
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.2e-174 616.3 499 73.1
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.9e-174 615.9 549 65.6
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 2.9e-174 615.9 543 70.7
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 8.5e-174 614.4 558 70.6
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 2.5e-173 612.8 546 66.1
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.6e-172 610.1 555 67.9
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.1e-172 609.8 543 68.7
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.1e-172 609.8 553 71.6
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 2.1e-172 609.8 543 72.9
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.0e-171 607.4 547 68.9
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.7e-169 600.1 568 65.0
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 4.8e-169 598.6 585 64.1
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 4.1e-168 595.5 546 68.7
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 7.0e-168 594.7 545 70.3
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 7.0e-168 594.7 506 69.0
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 4.5e-167 592.0 506 68.6
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.2e-166 589.7 551 67.0
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.2e-166 589.7 543 61.7
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.9e-166 589.3 532 66.2
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 3.8e-166 589.0 545 64.4
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 8.5e-166 587.8 550 66.2
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.9e-165 586.6 588 61.9
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 9.4e-165 584.3 515 70.3
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.0e-163 580.9 546 66.5
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.0e-163 578.9 588 60.4
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.2e-163 578.6 361 87.5
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 6.8e-163 578.2 551 68.2
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.5e-162 577.0 544 64.3
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 3.7e-161 572.4 544 65.3
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 6.3e-161 571.6 563 62.5
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 4.1e-160 568.9 489 70.8
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 9.1e-160 567.8 515 70.5
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.7e-159 566.2 554 64.6
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 4.5e-159 565.5 553 67.5
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 7.2e-157 558.1 566 64.3
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.8e-155 553.5 527 66.2
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.0e-154 550.1 550 66.7
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 9.8e-154 547.7 578 59.0
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 9.8e-154 547.7 538 63.4
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.7e-153 547.0 563 62.0
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.1e-152 544.3 546 58.1
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.8e-152 543.5 581 59.6
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 2.9e-150 536.2 550 66.9
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 3.9e-150 535.8 552 66.7
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 3.9e-150 535.8 552 66.7
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 5.0e-150 535.4 532 67.9
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 5.6e-149 531.9 555 57.8
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 2.8e-148 529.6 550 66.4
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 4.7e-148 528.9 552 66.1
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 2.6e-146 523.1 541 59.5
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 5.8e-146 521.9 547 63.4
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.9e-145 519.6 848 45.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 3.5e-143 512.7 547 64.5
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 5.0e-142 508.8 551 60.3
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 6.6e-142 508.4 505 70.7
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.1e-141 507.7 547 62.9
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 9.5e-141 504.6 539 63.3
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.8e-140 503.1 549 59.0
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 6.8e-139 498.4 548 55.8
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.2e-138 497.7 467 68.3
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 3.4e-138 496.1 550 62.5
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 3.7e-137 492.7 560 62.7
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 7.8e-135 485.0 538 61.5
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.1e-134 482.3 547 58.1
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.5e-133 478.0 603 53.7
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 6.2e-132 475.3 548 58.2
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 8.1e-132 474.9 557 56.7
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 4.0e-131 472.6 491 60.7
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.5e-130 470.7 469 66.7
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 3.5e-127 459.5 413 74.1
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 3.0e-126 456.4 544 55.7
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.2e-122 444.5 549 57.4
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 2.3e-118 430.3 366 74.9
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.9e-117 427.2 324 84.0
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 9.6e-117 424.9 557 52.1
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-116 424.5 543 54.1
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.3e-116 424.5 543 54.1
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 4.8e-116 422.5 445 65.4
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 2.4e-115 420.2 550 47.6
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.2e-114 417.9 557 50.8
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.5e-114 417.5 551 52.6
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.6e-109 399.1 327 63.6
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.3e-104 381.7 546 47.8
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.5e-103 379.8 556 46.8
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.5e-103 379.8 556 47.3
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.8e-102 377.5 519 54.9
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.9e-102 376.3 546 47.4
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.1e-102 375.9 556 47.1
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 8.7e-102 375.2 555 47.0
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.1e-100 370.5 556 46.8
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 6.2e-100 369.0 425 55.1
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.4e-88 331.3 369 65.9
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 9.3e-88 328.6 372 51.1
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.9e-81 307.0 353 65.4
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 5.0e-81 306.2 195 74.4
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 2.0e-74 284.3 312 59.9
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 4.5e-74 283.1 371 60.1
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 7.0e-67 259.2 313 48.2
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-61 241.9 513 38.6
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.2e-58 231.9 246 58.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 7.2e-48 196.1 182 75.8
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.0e-41 175.6 178 70.2
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 3.4e-37 160.6 213 53.1
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-36 157.1 252 41.7
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.8e-35 154.8 101 67.3
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.6e-31 141.7 270 42.2
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 5.2e-30 136.7 314 32.5
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.7e-28 131.7 176 52.8
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.0e-25 120.2 210 46.2
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 8.6e-25 119.4 89 82.0
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.8e-22 111.7 140 42.1
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.3e-22 111.3 208 40.4
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.2e-20 104.8 240 38.3
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.4e-19 100.1 112 59.8
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.6e-18 98.6 215 42.8
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 4.6e-18 97.1 56 83.9
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 1.3e-17 95.5 71 70.4
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.3e-17 95.5 71 70.4
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 4.3e-16 90.5 119 48.7
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 5.6e-16 90.1 51 80.4
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.8e-15 87.8 102 53.9
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 8.1e-15 86.3 54 64.8
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.4e-13 80.9 67 64.2
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 8.4e-12 76.3 83 62.7
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.4e-11 75.5 59 59.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.9e-11 75.1 66 60.6
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.1e-11 73.9 68 61.8
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.7e-10 71.2 131 32.1
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 5.1e-09 67.0 54 63.0
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.5e-08 65.5 64 53.1
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 5.2e-06 57.0 56 48.2
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 5.2e-06 57.0 509 27.5


User provided reference genes

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