Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004531 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.7e-41 172.2 85 100.0
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 2.1e-26 122.1 89 71.9
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 6.5e-20 100.5 89 58.4
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 9.3e-19 96.7 89 53.9
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.6e-18 95.9 89 55.1
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 6.0e-18 94.0 89 52.8
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.0e-17 93.2 89 55.1
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 1.8e-17 92.4 89 55.1
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 2.3e-17 92.0 88 55.7
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 5.1e-17 90.9 89 51.7
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 2.5e-16 88.6 82 57.3
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 2.5e-16 88.6 89 50.6
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 4.3e-16 87.8 89 50.6
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 4.3e-16 87.8 89 52.8
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 7.4e-16 87.0 89 51.7
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 7.4e-16 87.0 89 52.8
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 9.7e-16 86.7 89 49.4
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.3e-15 86.3 89 51.7
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.6e-15 85.9 90 52.2
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 2.8e-15 85.1 89 53.9
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 2.8e-15 85.1 89 50.6
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 3.7e-15 84.7 90 54.4
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 4.8e-15 84.3 89 50.6
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 8.2e-15 83.6 89 50.6
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 1.1e-14 83.2 89 52.8
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 1.1e-14 83.2 92 51.1
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.4e-14 82.8 89 52.8
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 1.8e-14 82.4 97 43.3
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 2.4e-14 82.0 89 48.3
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 2.4e-14 82.0 89 51.7
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 4.1e-14 81.3 89 48.3
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 5.3e-14 80.9 88 50.0
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 6.9e-14 80.5 89 48.3
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 9.0e-14 80.1 89 48.3
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 1.2e-13 79.7 91 50.5
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 1.2e-13 79.7 89 52.8
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.5e-13 79.3 91 50.5
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 1.5e-13 79.3 89 49.4
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 2.0e-13 79.0 91 48.4
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 2.0e-13 79.0 89 43.8
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 2.6e-13 78.6 89 50.6
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 2.6e-13 78.6 90 48.9
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 2.6e-13 78.6 90 48.9
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 3.4e-13 78.2 89 50.6
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 3.4e-13 78.2 89 48.3
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 3.4e-13 78.2 89 50.6
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 3.4e-13 78.2 90 51.1
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 4.5e-13 77.8 78 51.3
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 4.5e-13 77.8 89 48.3
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 5.9e-13 77.4 89 43.8
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 5.9e-13 77.4 89 49.4
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 5.9e-13 77.4 89 48.3
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 7.7e-13 77.0 91 48.4
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 7.7e-13 77.0 90 47.8
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 1.0e-12 76.6 89 43.8
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 1.0e-12 76.6 89 43.8
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 1.0e-12 76.6 89 43.8
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.0e-12 76.6 89 49.4
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 1.0e-12 76.6 90 47.8
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 1.3e-12 76.3 91 49.5
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 1.7e-12 75.9 89 43.8
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 1.7e-12 75.9 89 43.8
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.7e-12 75.9 89 48.3
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.7e-12 75.9 89 50.6
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 2.2e-12 75.5 89 47.2
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 2.2e-12 75.5 89 48.3
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 2.2e-12 75.5 89 50.6
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 2.9e-12 75.1 90 50.0
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 2.9e-12 75.1 89 50.6
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 2.9e-12 75.1 89 46.1
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 3.8e-12 74.7 91 48.4
Gohir.A03G109301 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.8e-12 74.7 59 59.3
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 3.8e-12 74.7 89 47.2
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 5.0e-12 74.3 89 41.6
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.0e-12 74.3 89 43.8
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.0e-12 74.3 89 43.8
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.0e-12 74.3 89 48.3
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 5.0e-12 74.3 89 47.2
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 6.5e-12 73.9 89 44.9
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 6.5e-12 73.9 89 47.2
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 6.5e-12 73.9 89 46.1
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 6.5e-12 73.9 89 46.1
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 8.5e-12 73.6 91 46.2
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 8.5e-12 73.6 89 42.7
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 8.5e-12 73.6 89 44.9
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 8.5e-12 73.6 89 47.2
Gohir.A08G106700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 8.5e-12 73.6 59 61.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 8.5e-12 73.6 90 43.3
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 1.1e-11 73.2 89 42.7
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.4e-11 72.8 91 46.2
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.4e-11 72.8 89 46.1
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 1.4e-11 72.8 89 47.2
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.5e-11 72.0 89 42.7
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 2.5e-11 72.0 89 46.1
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 2.5e-11 72.0 89 44.9
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 3.2e-11 71.6 89 47.2
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.5e-11 70.9 89 44.9
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 9.4e-11 70.1 89 42.7
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 9.4e-11 70.1 91 45.1
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 1.6e-10 69.3 89 43.8
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.6e-10 69.3 89 46.1
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.6e-10 69.3 89 47.2
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 1.6e-10 69.3 91 46.2
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 2.7e-10 68.6 89 41.6
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.7e-10 68.6 89 41.6
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 2.7e-10 68.6 91 46.2
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 3.6e-10 68.2 61 52.5
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 6.1e-10 67.4 89 41.6
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 6.1e-10 67.4 89 42.7
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 6.1e-10 67.4 83 43.4
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 7.9e-10 67.0 89 41.6
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 7.9e-10 67.0 89 41.6
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 7.9e-10 67.0 91 44.0
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 7.9e-10 67.0 91 45.1
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 1.0e-09 66.6 89 42.7
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.0e-09 66.6 89 42.7
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 1.4e-09 66.2 89 42.7
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.0e-09 65.1 89 42.7
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 6.7e-09 63.9 89 43.8
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 6.7e-09 63.9 83 44.6
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.5e-08 62.8 82 41.5
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.3e-07 59.7 89 38.2
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 3.1e-06 55.1 86 39.5


User provided reference genes

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