Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.7e-174 615.9 318 100.0
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 9.8e-130 467.2 238 95.4
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 7.3e-117 424.5 327 67.9
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 2.1e-116 422.9 324 67.6
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.4e-115 419.5 324 68.5
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.5e-114 416.8 324 67.3
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 2.6e-114 416.0 324 68.2
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 3.8e-113 412.1 324 67.6
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.8e-113 412.1 326 68.1
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 6.4e-113 411.4 324 66.7
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 6.4e-113 411.4 325 66.2
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 4.1e-112 408.7 324 68.2
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.2e-111 407.1 330 65.5
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 3.5e-111 405.6 324 67.0
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.0e-110 404.1 326 66.6
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.3e-110 403.7 324 66.0
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.7e-110 403.3 326 66.6
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.0e-110 402.5 326 66.9
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 3.0e-110 402.5 325 66.8
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 3.9e-110 402.1 321 64.8
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 5.1e-110 401.7 324 64.8
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 6.6e-110 401.4 326 66.0
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 8.7e-110 401.0 327 63.6
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 8.7e-110 401.0 324 67.3
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 8.7e-110 401.0 322 68.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 8.7e-110 401.0 327 67.9
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.1e-109 400.6 328 62.8
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.9e-109 399.8 325 67.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 9.6e-109 397.5 324 68.2
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.2e-108 397.1 325 66.8
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 4.7e-108 395.2 324 67.9
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.2e-108 394.8 324 67.6
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.2e-108 394.8 343 63.8
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.2e-108 394.8 343 63.8
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 8.1e-108 394.4 324 66.4
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.4e-107 393.7 324 66.0
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.4e-107 393.7 324 66.4
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 4.0e-107 392.1 324 64.5
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 4.0e-107 392.1 324 64.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.2e-107 391.7 323 66.9
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.9e-107 391.3 327 64.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.0e-107 391.0 325 65.5
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.2e-106 390.6 324 64.2
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.8e-106 388.3 324 64.5
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 9.9e-106 387.5 328 65.2
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.3e-105 387.1 326 65.3
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 8.4e-105 384.4 321 65.4
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.4e-104 383.6 323 64.4
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 2.4e-104 382.9 326 64.7
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 7.1e-104 381.3 326 63.2
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.6e-103 380.2 330 63.9
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.1e-103 379.8 335 64.2
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.6e-103 378.6 326 61.7
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 6.0e-103 378.3 314 65.3
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 7.8e-103 377.9 327 60.2
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.3e-102 376.3 326 64.1
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 3.0e-102 375.9 323 62.8
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 3.9e-102 375.6 325 63.4
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 5.1e-102 375.2 328 62.5
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 5.1e-102 375.2 329 63.2
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.1e-102 375.2 337 62.3
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.1e-101 374.0 325 63.7
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.1e-101 374.0 333 63.7
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.1e-101 374.0 326 62.6
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 9.6e-101 370.9 334 62.9
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 8.1e-100 367.9 350 57.7
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 5.3e-99 365.2 324 62.7
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 6.9e-99 364.8 324 63.0
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 9.0e-99 364.4 327 59.9
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.5e-98 363.6 348 61.2
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 3.4e-98 362.5 325 63.7
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 4.5e-98 362.1 323 61.6
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 4.5e-98 362.1 325 61.2
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 7.6e-98 361.3 321 61.4
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.9e-97 358.6 334 61.7
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.1e-96 357.5 324 60.8
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.4e-96 357.1 320 62.5
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 4.2e-96 355.5 328 61.3
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 5.4e-96 355.1 325 62.5
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-95 352.8 328 60.7
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 3.9e-94 349.0 338 58.0
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 5.1e-94 348.6 207 79.2
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.5e-93 347.1 258 67.4
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 9.6e-93 344.4 287 63.8
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.3e-92 344.0 287 63.8
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 2.8e-92 342.8 328 60.4
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.1e-91 340.9 342 57.9
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.2e-90 337.4 320 57.8
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 4.5e-90 335.5 327 59.0
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.7e-89 333.6 388 53.1
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 2.2e-89 333.2 323 57.0
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 4.9e-89 332.0 298 63.4
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-88 330.9 364 53.3
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.4e-88 330.5 325 60.0
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.4e-88 329.7 325 60.0
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 4.2e-88 328.9 281 63.3
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.0e-87 325.1 355 53.5
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 1.8e-86 323.6 315 60.6
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 6.7e-86 321.6 262 67.6
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 3.7e-84 315.8 326 57.4
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 3.7e-84 315.8 323 58.5
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 3.7e-84 315.8 326 57.4
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 3.7e-84 315.8 323 58.5
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 3.7e-84 315.8 326 57.4
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 3.7e-84 315.8 323 58.5
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.7e-84 315.8 328 57.0
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.1e-83 314.3 326 57.1
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 1.1e-83 314.3 320 56.9
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 2.4e-83 313.2 322 56.8
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 4.0e-83 312.4 322 58.4
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.0e-81 307.8 205 71.2
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 3.8e-81 305.8 327 56.9
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 4.9e-81 305.4 338 54.7
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.1e-79 300.1 320 54.1
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.7e-79 299.7 291 59.5
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.8e-78 297.0 268 61.2
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 3.0e-78 296.2 195 71.8
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 3.9e-78 295.8 323 55.1
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.9e-77 293.5 319 53.6
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 5.7e-77 292.0 270 61.1
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 4.1e-75 285.8 325 49.5
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.5e-72 275.4 329 51.1
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.2e-72 275.0 328 50.9
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 9.4e-72 274.6 329 51.1
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 9.4e-72 274.6 310 49.7
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.6e-71 272.7 324 50.6
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.0e-70 271.2 334 48.2
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-70 270.8 328 50.6
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 8.8e-70 268.1 247 63.2
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.5e-69 267.3 270 58.5
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 2.0e-69 266.9 208 63.5
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 3.7e-68 262.7 318 47.2
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 4.8e-68 262.3 324 49.4
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.4e-67 260.8 315 48.3
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.5e-66 257.3 252 59.9
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 8.5e-65 251.5 324 48.8
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.2e-55 221.1 277 49.5
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.0e-53 213.8 226 58.0
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.2e-52 208.4 205 58.5
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.1e-43 181.4 180 64.4
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 9.1e-43 178.3 185 57.3
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 6.1e-39 165.6 190 56.8
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-37 159.5 247 42.9
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.0e-35 152.1 101 70.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.1e-31 139.0 282 34.8
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.9e-25 120.2 178 51.7
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 2.8e-23 113.6 145 54.5
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.0e-22 111.7 185 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.7e-20 103.2 140 42.1
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.2e-18 98.2 224 35.7
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 4.6e-18 96.3 144 48.6
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.3e-17 94.7 51 80.4
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 6.6e-17 92.4 54 74.1
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.9e-16 90.9 145 49.7
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.6e-15 87.8 58 67.2
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.1e-14 85.1 123 39.8
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 6.8e-14 82.4 55 74.5
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.7e-12 77.8 89 57.3
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 2.1e-10 70.9 59 54.2
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 1.1e-08 65.1 270 29.3
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.9e-08 64.3 55 63.6


User provided reference genes

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