Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1542 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.5e-74 282.7 139 100.0
CDE12G0733 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 3.5e-71 271.6 138 96.4
TAR374G0248 Trochodendron aralioides HOM05D000399 ORTHO05D000304 3.6e-28 128.6 139 50.4
Nn4g22024 Nelumbo nucifera HOM05D000399 ORTHO05D000304 3.1e-27 125.6 139 50.4
Aqoxy3G03689 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 7.6e-26 120.9 139 46.8
Prupe.6G363600 Prunus persica HOM05D000399 ORTHO05D000304 8.4e-25 117.5 138 44.2
Dinv21364 Davidia involucrata HOM05D000399 ORTHO05D000304 2.4e-24 115.9 139 43.9
Cfa019273 Carpinus fangiana HOM05D000399 ORTHO05D000304 5.4e-24 114.8 140 45.7
Haze_07648 Corylus avellana HOM05D000399 ORTHO05D000304 9.2e-24 114.0 140 45.0
PSO170G4397 Papaver somniferum HOM05D000399 ORTHO05D000304 1.2e-23 113.6 140 47.1
Atru.chr12.1701 Acer truncatum HOM05D000399 ORTHO05D000304 2.1e-23 112.8 138 42.8
VMungo1383G1425 Vigna mungo HOM05D000399 ORTHO05D000304 4.6e-23 111.7 139 43.9
CiPaw.07G083000 Carya illinoinensis HOM05D000399 ORTHO05D000304 7.8e-23 110.9 140 44.3
MD04G1247300 Malus domestica HOM05D000399 ORTHO05D000304 7.8e-23 110.9 138 42.8
QL01p047991 Quercus lobata HOM05D000399 ORTHO05D000304 1.0e-22 110.5 139 44.6
Dinv21368 Davidia involucrata HOM05D000399 ORTHO05D000304 2.3e-22 109.4 139 45.3
CiPaw.08G112900 Carya illinoinensis HOM05D000399 ORTHO05D000304 3.9e-22 108.6 139 43.2
VMungo0540G2370 Vigna mungo HOM05D000399 ORTHO05D000304 5.1e-22 108.2 139 44.6
Phvul.008G129500 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 6.6e-22 107.8 139 43.9
VMungo0540G1266 Vigna mungo HOM05D000399 ORTHO05D000304 8.6e-22 107.5 139 44.6
Actinidia34702 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.1e-21 107.1 137 41.6
Cpa.g.sc123.45 Carica papaya HOM05D000399 ORTHO05D000304 1.1e-21 107.1 137 41.6
Lj6g0004869 Lotus japonicus HOM05D000399 ORTHO05D000304 1.1e-21 107.1 139 41.0
SGA_v2.0_scaffold122G33198 Striga asiatica HOM05D000399 ORTHO05D000304 1.5e-21 106.7 140 41.4
TPR.G26365 Trifolium pratense HOM05D000399 ORTHO05D000304 1.5e-21 106.7 138 43.5
TPR.G29787 Trifolium pratense HOM05D000399 ORTHO05D000304 1.5e-21 106.7 138 42.8
Cfa006237 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.9e-21 106.3 139 43.9
vmacro19579 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.9e-21 106.3 138 42.0
GSVIVG01019052001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.9e-21 106.3 141 44.0
vmacro19544 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.5e-21 105.9 138 41.3
Rhsim05G0165200 Rhododendron simsii HOM05D000399 ORTHO05D000304 3.3e-21 105.5 139 43.2
Ciclev10010912m.g Citrus clementina HOM05D000399 ORTHO05D000304 4.3e-21 105.1 139 43.2
Manes.12G002800 Manihot esculenta HOM05D000399 ORTHO05D000304 4.3e-21 105.1 139 42.4
HanXRQChr16g0511821 Helianthus annuus HOM05D000399 ORTHO05D000304 5.6e-21 104.8 138 42.0
Lj2g0005366 Lotus japonicus HOM05D000399 ORTHO05D000304 5.6e-21 104.8 138 39.9
Duzib268G0367 Durio zibethinus HOM05D000399 ORTHO05D000304 7.3e-21 104.4 138 42.0
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 7.3e-21 104.4 138 42.0
Migut.F01854 Erythranthe guttata HOM05D000399 ORTHO05D000304 9.6e-21 104.0 139 41.0
Medtr2g030490 Medicago truncatula HOM05D000399 ORTHO05D000304 9.6e-21 104.0 138 42.0
HPP92_020100 Vanilla planifolia HOM05D000399 ORTHO05D000304 9.6e-21 104.0 138 37.0
CANSAT54G0243 Cannabis sativa HOM05D000399 ORTHO05D000304 1.2e-20 103.6 140 41.4
Ciclev10010911m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.2e-20 103.6 139 42.4
Psat1g166760 Pisum sativum HOM05D000399 ORTHO05D000304 1.2e-20 103.6 138 41.3
TPR.G18923 Trifolium pratense HOM05D000399 ORTHO05D000304 1.2e-20 103.6 138 42.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 2.1e-20 102.8 140 42.9
Lj6g0009999 Lotus japonicus HOM05D000399 ORTHO05D000304 2.1e-20 102.8 138 39.1
DCAR_001171 Daucus carota HOM05D000399 ORTHO05D000304 2.8e-20 102.4 138 40.6
DCAR_010108 Daucus carota HOM05D000399 ORTHO05D000304 2.8e-20 102.4 138 40.6
Duzib251G0658 Durio zibethinus HOM05D000399 ORTHO05D000304 2.8e-20 102.4 138 41.3
Eucgr.B01461 Eucalyptus grandis HOM05D000399 ORTHO05D000304 2.8e-20 102.4 139 41.7
Glyma.09G025300 Glycine max HOM05D000399 ORTHO05D000304 2.8e-20 102.4 138 42.8
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 2.8e-20 102.4 139 45.3
ATR0582G119 Amborella trichopoda HOM05D000399 ORTHO05D000304 3.6e-20 102.1 138 39.1
Gohir.D01G117500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.6e-20 102.1 138 42.0
Gorai.002G143000 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.6e-20 102.1 138 42.0
Manes.12G003000 Manihot esculenta HOM05D000399 ORTHO05D000304 3.6e-20 102.1 138 40.6
Thecc.05G187300 Theobroma cacao HOM05D000399 ORTHO05D000304 3.6e-20 102.1 138 41.3
Lj2C166G3 Lonicera japonica HOM05D000399 ORTHO05D000304 4.7e-20 101.7 138 41.3
DCAR_006124 Daucus carota HOM05D000399 ORTHO05D000304 6.2e-20 101.3 132 43.9
Phvul.006G127100 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 6.2e-20 101.3 139 43.9
Os03g0583900 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 1.4e-19 100.1 138 40.6
Gohir.D05G348400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.8e-19 99.8 137 41.6
Gorai.009G374900 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.8e-19 99.8 137 41.6
Phvul.006G127200 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.8e-19 99.8 138 42.8
TWI36G1251 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 1.8e-19 99.8 140 40.0
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 2.4e-19 99.4 139 44.6
AUR62006631 Chenopodium quinoa HOM05D000399 ORTHO05D000304 4.0e-19 98.6 140 37.1
Cc09_g03980 Coffea canephora HOM05D000399 ORTHO05D000304 4.0e-19 98.6 139 39.6
Oeu034687.1 Olea europaea HOM05D000399 ORTHO05D000304 4.0e-19 98.6 141 39.0
TPR.G9044 Trifolium pratense HOM05D000399 ORTHO05D000304 4.0e-19 98.6 138 40.6
Gohir.A01G133600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.8e-19 97.8 138 40.6
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 6.8e-19 97.8 138 38.4
SHI23152 Sapria himalayana HOM05D000399 ORTHO05D000304 8.9e-19 97.4 137 37.2
arahy.Tifrunner.gnm1.ann1.T4IIR2 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.2e-18 97.1 137 40.9
Medtr1g060740 Medicago truncatula HOM05D000399 ORTHO05D000304 1.2e-18 97.1 138 39.9
Oeu034993.1 Olea europaea HOM05D000399 ORTHO05D000304 1.2e-18 97.1 139 38.8
Sabra10G0139100 Salix brachista HOM05D000399 ORTHO05D000304 1.2e-18 97.1 139 43.2
Zm00001eb219690 Zea mays HOM05D000399 ORTHO05D000304 2.0e-18 96.3 140 35.7
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 2.6e-18 95.9 139 37.4
Lsat_1_v5_gn_0_14741 Lactuca sativa HOM05D000399 ORTHO05D000304 2.6e-18 95.9 139 38.8
AUR62000283 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.4e-18 95.5 139 38.8
Medtr8g069975 Medicago truncatula HOM05D000399 ORTHO05D000304 5.8e-18 94.7 138 40.6
Potri.010G181400 Populus trichocarpa HOM05D000399 ORTHO05D000304 5.8e-18 94.7 140 40.0
Glyma.09G025400 Glycine max HOM05D000399 ORTHO05D000304 7.6e-18 94.4 139 38.8
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 9.9e-18 94.0 138 36.2
CSS0018580 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 9.9e-18 94.0 138 36.2
FvH4_6g00200 Fragaria vesca HOM05D000399 ORTHO05D000304 9.9e-18 94.0 139 38.8
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 9.9e-18 94.0 139 38.8
FAN14G1038 Fragaria x ananassa HOM05D000399 ORTHO05D000304 9.9e-18 94.0 139 38.8
arahy.Tifrunner.gnm1.ann1.J1H6RV Arachis hypogaea HOM05D000399 ORTHO05D000304 1.3e-17 93.6 137 39.4
ECA232G4647 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.3e-17 93.6 139 38.1
MELO3C010042.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.7e-17 93.2 137 40.1
Lsat_1_v5_gn_0_18380 Lactuca sativa HOM05D000399 ORTHO05D000304 1.7e-17 93.2 139 37.4
Gohir.A04G036500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.8e-17 92.0 131 39.7
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 6.4e-17 91.3 137 39.4
FvH4_6g37440 Fragaria vesca HOM05D000399 ORTHO05D000304 6.4e-17 91.3 137 36.5
FAN14G3549 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.4e-17 91.3 137 36.5
Lsat_1_v5_gn_0_14701 Lactuca sativa HOM05D000399 ORTHO05D000304 6.4e-17 91.3 138 34.8
BraA05t23126Z Brassica rapa HOM05D000399 ORTHO05D000304 1.4e-16 90.1 138 37.0
DCAR_012419 Daucus carota HOM05D000399 ORTHO05D000304 1.4e-16 90.1 133 41.4
Lalb_Chr15g0088811 Lupinus albus HOM05D000399 ORTHO05D000304 1.4e-16 90.1 137 36.5
RcHm_v2.0_Chr3g0447571 Rosa chinensis HOM05D000399 ORTHO05D000304 1.4e-16 90.1 138 36.2
ClCG03G010530 Citrullus lanatus HOM05D000399 ORTHO05D000304 1.9e-16 89.7 137 40.9
Sc06g0004990 Simmondsia chinensis HOM05D000399 ORTHO05D000304 1.9e-16 89.7 138 36.2
ECA232G2408 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.4e-16 89.4 124 39.5
Nitab4.5_0019786g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.2e-16 89.0 138 34.8
A05p43890 Brassica napus HOM05D000399 ORTHO05D000304 4.2e-16 88.6 138 37.0
BolC5t35015H Brassica oleracea HOM05D000399 ORTHO05D000304 4.2e-16 88.6 139 36.0
Haze_04593 Corylus avellana HOM05D000399 ORTHO05D008029 4.2e-16 88.6 135 40.7
Solyc11g008540.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.4e-16 88.2 141 34.0
C05p63490 Brassica napus HOM05D000399 ORTHO05D000304 9.3e-16 87.4 139 36.7
CiPaw.08G113700 Carya illinoinensis HOM05D000399 ORTHO05D000304 9.3e-16 87.4 138 37.7
MSTRG.8199 Avicennia marina HOM05D000399 ORTHO05D000304 1.2e-15 87.0 139 36.7
BolC5t35013H Brassica oleracea HOM05D000399 ORTHO05D000304 1.2e-15 87.0 139 36.7
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 1.2e-15 87.0 139 36.0
Sopen11g004330 Solanum pennellii HOM05D000399 ORTHO05D000304 1.2e-15 87.0 139 34.5
THA.LOC104820849 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.2e-15 87.0 139 38.1
Carub.0003s0246 Capsella rubella HOM05D000399 ORTHO05D000304 1.6e-15 86.7 138 36.2
FAN09G4083 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.6e-15 86.7 137 35.8
Nitab4.5_0005002g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.6e-15 86.7 139 35.3
BcaC05g29882 Brassica carinata HOM05D000399 ORTHO05D000304 2.1e-15 86.3 139 36.0
FAN05G5393 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.1e-15 86.3 137 36.5
Manes.12G002750 Manihot esculenta HOM05D000399 ORTHO05D000304 2.7e-15 85.9 136 39.0
PGR031G1259 Punica granatum HOM05D000399 ORTHO05D000304 4.6e-15 85.1 137 35.0
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 6.0e-15 84.7 133 35.3
CiPaw.08G113800 Carya illinoinensis HOM05D000399 ORTHO05D000304 6.0e-15 84.7 138 37.0
PGSC0003DMG400016641 Solanum tuberosum HOM05D000399 ORTHO05D000304 6.0e-15 84.7 140 35.0
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.3e-14 83.6 140 36.4
AL3G12920 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.3e-14 83.6 138 35.5
AT3G03300 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.3e-14 83.6 138 36.2
Cfa006239 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.3e-14 83.6 138 39.1
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.7e-14 83.2 139 36.0
CARHR077330 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.7e-14 83.2 139 35.3
Thhalv10019898m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.7e-14 83.2 139 37.4
Hund07367 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.7e-14 83.2 140 32.9
Sopen06g015290 Solanum pennellii HOM05D000399 ORTHO05D000304 1.7e-14 83.2 140 34.3
SHI13689 Sapria himalayana HOM05D000399 ORTHO05D000304 3.0e-14 82.4 133 35.3
SalBow6G0953 Salvia bowleyana HOM05D000399 ORTHO05D000304 3.9e-14 82.0 138 35.5
Solyc06g048960.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.9e-14 82.0 140 34.3
CiPaw.08G113600 Carya illinoinensis HOM05D000399 ORTHO05D000304 5.1e-14 81.6 138 37.0
Solyc11g008520.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.6e-14 81.3 142 33.1
Solyc11g008530.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.6e-14 81.3 142 32.4
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 6.6e-14 81.3 142 33.1
Gohir.A04G036800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 8.7e-14 80.9 137 37.2
SalBow6G2829 Salvia bowleyana HOM05D000399 ORTHO05D000304 8.7e-14 80.9 138 35.5
unitig_26.g9215 Utricularia gibba HOM05D000399 ORTHO05D000304 8.7e-14 80.9 137 32.8
CAN.G321.26 Capsicum annuum HOM05D000399 ORTHO05D000304 1.1e-13 80.5 137 32.1
CAN.G321.25 Capsicum annuum HOM05D000399 ORTHO05D000304 1.9e-13 79.7 143 35.7
Sp6g09960 Schrenkiella parvula HOM05D000399 ORTHO05D000304 1.9e-13 79.7 139 36.7
MBI07_g11056_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 9.6e-13 77.4 91 42.9
Prupe.7G048000 Prunus persica HOM05D000399 ORTHO05D000304 1.8e-11 73.2 92 39.1
Gohir.A04G036700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.1e-11 72.4 120 37.5
MD14G1082800 Malus domestica HOM05D000399 ORTHO05D000304 4.0e-11 72.0 93 38.7
Actinidia34701 Actinidia chinensis HOM05D000399 ORTHO05D000304 6.9e-11 71.2 115 35.7
MD14G1082600 Malus domestica HOM05D000399 ORTHO05D000304 1.5e-10 70.1 88 38.6
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.5e-10 70.1 138 31.2
Dinv21363 Davidia involucrata HOM05D000399 ORTHO05D000304 2.0e-10 69.7 90 38.9
Dinv21362 Davidia involucrata HOM05D000399 ORTHO05D000304 3.4e-10 68.9 108 35.2
MD12G1087600 Malus domestica HOM05D000399 ORTHO05D000304 4.4e-10 68.6 93 37.6
Prupe.7G047700 Prunus persica HOM05D000399 ORTHO05D000304 1.7e-09 66.6 92 38.0
Sopen11g004320 Solanum pennellii HOM05D000399 ORTHO05D000304 2.9e-09 65.9 135 29.6
arahy.Tifrunner.gnm1.ann1.5JB048 Arachis hypogaea HOM05D000399 ORTHO05D000304 3.8e-09 65.5 93 35.5
Lj2C165T13 Lonicera japonica HOM05D000399 ORTHO05D000304 1.4e-08 63.5 119 31.9
Prupe.7G047900 Prunus persica HOM05D000399 ORTHO05D000304 1.4e-08 63.5 92 33.7
SEGI_08613 Sequoiadendron giganteum HOM05D000399 ORTHO05D000304 3.2e-08 62.4 146 28.1
FvH4_2g18930 Fragaria vesca HOM05D000399 ORTHO05D000304 5.4e-08 61.6 142 28.9
RcHm_v2.0_Chr6g0284721 Rosa chinensis HOM05D000399 ORTHO05D000304 5.4e-08 61.6 144 29.2
Lj1g0009784 Lotus japonicus HOM05D000399 ORTHO05D000304 1.2e-07 60.5 95 34.7
arahy.Tifrunner.gnm1.ann1.3LM8QV Arachis hypogaea HOM05D000399 ORTHO05D000304 1.6e-07 60.1 93 32.3
FAN15G1291 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.5e-07 58.9 144 29.2
Zm00001eb219700 Zea mays HOM05D000399 ORTHO05D000304 6.0e-07 58.2 91 36.3
ATR0767G233 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.3e-06 57.0 148 29.1
Aqoxy7G04095 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.3e-06 57.0 152 29.6
Mapoly0003s0222 Marchantia polymorpha HOM05D000399 ORTHO05D000304 2.3e-06 56.2 154 27.9
Glyma.19G254900 Glycine max HOM05D000399 ORTHO05D000304 3.0e-06 55.8 90 34.4
Prupe.8G202000 Prunus persica HOM05D000399 ORTHO05D000304 3.0e-06 55.8 144 27.8
MELO3C011495.2 Cucumis melo HOM05D000399 ORTHO05D000304 3.9e-06 55.5 145 28.3
Nn8g38601 Nelumbo nucifera HOM05D000399 ORTHO05D000304 3.9e-06 55.5 143 28.0
Medtr3g105390 Medicago truncatula HOM05D000399 ORTHO05D000304 5.1e-06 55.1 148 26.4
CiPaw.14G040900 Carya illinoinensis HOM05D000399 ORTHO05D000304 6.6e-06 54.7 145 24.1
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 8.7e-06 54.3 143 27.3
DCAR_001243 Daucus carota HOM05D000399 ORTHO05D000304 8.7e-06 54.3 142 27.5


User provided reference genes

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