Gene: CiPaw.07G083000
General Information
Structural Information
- Species Carya illinoinensis
- Gene Identifier CiPaw.07G083000
- Transcript Identifier CiPaw.07G083000.1
- Gene Type Coding gene
- Location Chr07 : 18437643-18450750 : negative
Gene Family Information
- ID HOM05D000399
- #Genes/#Species 1254/98
- Phylogenetic origin
- ID ORTHO05D000304
- #Genes/#Species 1156/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id CiPaw.07G083000.v1.1
- pacid 45826216
- locus Caril.07G081800
Descriptions
- Description PF00270//PF00271//PF00636//PF02170//PF03368 - DEAD/DEAH box helicase (DEAD) // Helicase conserved C-terminal domain (Helicase_C) // Ribonuclease III domain (Ribonuclease_3) // PAZ domain (PAZ) // Dicer dimerisation domain (Dicer_dimer)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0051214 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immunity against RNA virus | AT3G03300 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT3G03300 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | Solyc11g008530.3 |
| GO:0051607 | ISO | PLAZA Integrative Orthology | defense response to virus | AT3G03300 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT3G03300 |
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT3G03300 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0004525 | IEA | InterPro | ribonuclease III activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036085 | PAZ domain superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR038248 | Dicer dimerisation domain superfamily |
| IPR036389 | Ribonuclease III, endonuclease domain superfamily |
| IPR000999 | Ribonuclease III domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR003100 | PAZ domain |
| IPR001650 | Helicase, C-terminal |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |