Gene: Solyc06g048960.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g048960.4
  • Transcript Identifier Solyc06g048960.4.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 29745730-29758070 : negative

Gene Family Information

  • ID HOM05D000399
  • #Genes/#Species 1254/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g048960.4.1
  • uniprot A0A3Q7GUY9
  • gene_id Solyc06g048960

Descriptions

  • Description Dicer-like 2a
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT3G03300
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT3G03300
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT3G03300
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT3G03300
GO:0051214
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immunity against RNA virus AT3G03300
GO:0030422
IBA
GOA Databaseproduction of siRNA involved in RNA interference
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0031047
IDA
Gene Ontologygene silencing by RNA1
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004525
IBA
IEA
GOA Databaseribonuclease III activity
GO:0004525
IEA
InterProribonuclease III activity
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0016891
IEA
GOA Databaseendoribonuclease activity, producing 5'-phosphomonoesters
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus
GO:0005737
IBA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000999 Ribonuclease III domain
IPR036389 Ribonuclease III, endonuclease domain superfamily
IPR001650 Helicase, C-terminal
IPR038248 Dicer dimerisation domain superfamily
IPR011545 DEAD/DEAH box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR003100 PAZ domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036085 PAZ domain superfamily
Mapman id Description
35.1 not assigned.annotated