Gene: Sopen11g004330

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g004330
  • Transcript Identifier Sopen11g004330.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 2796482-2805789 : positive

Gene Family Information

  • ID HOM05D000399
  • #Genes/#Species 1254/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g004330.1

Descriptions

  • Description Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs. | dicer-like 2 (DCL2) | FUNCTIONS IN: in 7 functions | INVOLVED IN: defense response to virus, maintenance of DNA methylation, production of ta-siRNAs involved in RNA interference | LOCATED IN: intracellular | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal , Double-stranded RNA-binding , Argonaute/Dicer protein, PAZ , Ribonuclease III , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Dicer double-stranded RNA-binding fold , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: dicer-like 4 ., Ribonuclease III
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing
GO:0051214
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immunity against RNA virus AT3G03300
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT3G03300
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA Solyc11g008530.3
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT3G03300
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT3G03300
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT3G03300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0004525
IEA
InterProribonuclease III activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003100 PAZ domain
IPR036389 Ribonuclease III, endonuclease domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000999 Ribonuclease III domain
IPR001650 Helicase, C-terminal
IPR038248 Dicer dimerisation domain superfamily
IPR011545 DEAD/DEAH box helicase domain
IPR036085 PAZ domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
35.1 not assigned.annotated