Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 0.0e+00 1111.7 593 100.0
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.1e-86 325.1 253 63.2
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 2.5e-86 323.9 238 65.5
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 4.3e-86 323.2 251 62.9
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.8e-85 320.5 244 61.9
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 3.6e-85 320.1 247 62.8
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 3.6e-85 320.1 247 62.8
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 3.6e-85 320.1 253 61.7
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 4.7e-85 319.7 256 59.8
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.1e-84 318.5 253 61.3
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 1.8e-84 317.8 251 61.0
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 1.8e-84 317.8 249 61.8
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 3.1e-84 317.0 254 60.6
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 4.0e-84 316.6 249 61.0
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 5.2e-84 316.2 247 62.8
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 5.2e-84 316.2 247 62.8
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 8.9e-84 315.5 251 61.4
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 8.9e-84 315.5 252 61.1
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 8.9e-84 315.5 249 60.6
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 8.9e-84 315.5 249 60.6
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 8.9e-84 315.5 253 60.9
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 1.5e-83 314.7 253 60.5
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 2.0e-83 314.3 246 62.6
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 2.6e-83 313.9 245 62.4
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.6e-83 313.9 245 63.7
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 3.4e-83 313.5 250 61.2
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 3.4e-83 313.5 297 56.2
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 3.4e-83 313.5 254 63.4
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 4.4e-83 313.2 259 59.5
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 5.8e-83 312.8 247 61.9
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 5.8e-83 312.8 247 61.9
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 7.5e-83 312.4 245 63.7
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 1.3e-82 311.6 261 59.8
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.7e-82 311.2 248 61.3
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 1.7e-82 311.2 256 61.3
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 1.7e-82 311.2 245 63.3
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 2.2e-82 310.8 250 61.2
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 3.7e-82 310.1 248 60.5
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 6.4e-82 309.3 247 61.1
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 8.3e-82 308.9 247 61.1
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 8.3e-82 308.9 249 62.7
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.1e-81 308.5 245 61.2
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.4e-81 308.1 248 61.7
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.9e-81 307.8 247 60.3
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.9e-81 307.8 247 60.7
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 5.4e-81 306.2 247 61.1
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.6e-80 304.7 247 59.9
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 3.5e-80 303.5 242 62.8
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 3.5e-80 303.5 253 60.9
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 6.0e-80 302.8 273 55.7
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.0e-79 302.0 275 58.9
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.0e-79 302.0 251 59.8
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.3e-79 301.6 253 60.1
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.3e-79 300.8 246 58.5
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 3.9e-79 300.1 279 57.7
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 8.6e-79 298.9 247 59.9
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.1e-78 298.5 326 51.8
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.5e-78 298.1 247 59.5
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.5e-78 298.1 290 53.4
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 1.9e-78 297.7 254 59.1
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 1.9e-78 297.7 264 58.0
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 3.3e-78 297.0 245 60.0
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 3.3e-78 297.0 247 58.7
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 4.3e-78 296.6 243 60.5
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 9.5e-78 295.4 265 56.6
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.2e-77 295.0 326 51.2
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.1e-77 294.3 243 60.9
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.8e-77 293.9 248 59.7
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 3.6e-77 293.5 276 56.9
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 4.7e-77 293.1 299 54.2
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 4.7e-77 293.1 268 57.5
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 4.7e-77 293.1 244 61.1
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 4.7e-77 293.1 277 56.7
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 6.2e-77 292.7 247 57.5
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 6.2e-77 292.7 247 57.5
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 8.1e-77 292.4 247 57.5
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.4e-76 291.6 246 59.3
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.4e-76 291.6 247 56.7
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 1.8e-76 291.2 247 56.7
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.8e-76 291.2 266 55.3
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 2.4e-76 290.8 245 57.6
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 2.4e-76 290.8 339 48.7
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 4.0e-76 290.0 291 52.6
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 1.2e-75 288.5 245 60.0
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 2.0e-75 287.7 250 55.6
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 3.4e-75 287.0 247 55.5
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 1.7e-74 284.6 295 51.9
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.7e-74 284.6 241 56.4
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.8e-74 283.5 258 56.2
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.2e-72 278.5 244 54.9
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.6e-72 278.1 247 55.5
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.6e-72 278.1 245 56.3
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.7e-72 277.3 259 53.7
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 1.7e-71 274.6 235 54.9
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 2.3e-71 274.2 244 55.7
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.0e-71 273.9 380 42.4
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 3.9e-71 273.5 244 55.7
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 3.9e-71 273.5 210 64.8
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 8.7e-71 272.3 261 52.9
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.5e-70 271.6 244 55.3
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 2.5e-70 270.8 271 52.4
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 4.3e-70 270.0 251 54.6
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 9.6e-70 268.9 255 53.7
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.2e-69 268.5 251 53.8
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.6e-69 268.1 264 51.9
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.6e-69 268.1 244 54.1
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 2.8e-69 267.3 213 59.6
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.1e-68 265.4 211 62.1
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 3.1e-68 263.8 250 54.0
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 2.0e-67 261.2 237 55.3
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 5.8e-67 259.6 250 53.6
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 9.9e-67 258.8 244 53.7
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 1.3e-66 258.5 252 52.4
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 5.4e-65 253.1 291 48.5
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.1e-65 252.7 244 52.0
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 6.0e-64 249.6 231 55.0
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 1.6e-61 241.5 238 49.2
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 8.1e-61 239.2 188 61.7
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 1.2e-59 235.3 190 59.5
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 4.5e-59 233.4 209 56.9
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 9.9e-59 232.3 173 64.2
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 9.9e-59 232.3 242 52.5
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 3.8e-58 230.3 183 59.6
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.0e-55 222.2 171 64.9
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 1.5e-54 218.4 193 58.0
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.5e-54 218.4 170 57.6
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 2.5e-54 217.6 205 53.7
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.8e-52 211.5 246 46.3
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.5e-51 208.4 247 43.7
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.3e-45 188.7 156 57.1
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 1.7e-42 178.3 273 38.1
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 2.5e-41 174.5 146 60.3
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 5.1e-39 166.8 216 42.6
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 8.2e-37 159.5 111 65.8
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.3e-34 152.1 130 56.2
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 5.7e-30 136.7 100 60.0
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 4.8e-29 133.7 105 61.0
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 1.7e-26 125.2 119 50.4
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 1.4e-25 122.1 99 61.6
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 2.3e-23 114.8 75 68.0
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 2.0e-19 101.7 69 65.2
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 2.6e-19 101.3 71 63.4
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 4.7e-16 90.5 75 60.0
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 5.2e-15 87.0 185 30.8
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 1.1e-14 85.9 64 64.1
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 2.6e-14 84.7 64 65.6
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.7e-13 82.0 62 66.1
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 3.1e-12 77.8 92 48.9
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.1e-12 77.8 92 43.5
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 1.2e-11 75.9 210 27.1
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 5.9e-11 73.6 68 55.9
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 5.0e-10 70.5 191 28.8
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.1e-09 69.3 268 25.0
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 5.5e-09 67.0 251 25.5
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 9.4e-09 66.2 144 28.5
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 9.4e-09 66.2 51 58.8
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.2e-08 65.9 62 51.6
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 2.1e-08 65.1 225 25.8
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 2.1e-08 65.1 202 27.7
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 8.0e-08 63.2 195 25.6
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 2.3e-07 61.6 207 26.6
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 4.0e-07 60.8 203 25.6
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 2.0e-06 58.5 61 47.5
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 4.4e-06 57.4 197 23.9
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 5.7e-06 57.0 204 26.5
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 5.7e-06 57.0 195 25.1
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 7.5e-06 56.6 61 45.9
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 7.5e-06 56.6 37 73.0
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 7.5e-06 56.6 246 25.2


User provided reference genes

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