Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR279710 Cardamine hirsuta HOM05D003015 ORTHO05D003733 1.9e-46 188.7 89 100.0
Aa31LG1G6670 Aethionema arabicum HOM05D003015 ORTHO05D003733 3.7e-18 94.7 100 52.0
Sp1g06110 Schrenkiella parvula HOM05D003015 ORTHO05D003733 3.7e-18 94.7 100 52.0
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 4.8e-18 94.4 100 52.0
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 6.3e-18 94.0 100 52.0
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 8.3e-18 93.6 102 51.0
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 8.3e-18 93.6 102 51.0
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 1.1e-17 93.2 100 51.0
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 1.1e-17 93.2 100 51.0
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 2.4e-17 92.0 100 50.0
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 2.4e-17 92.0 100 50.0
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 4.1e-17 91.3 102 50.0
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 4.1e-17 91.3 102 50.0
Glyma.02G303600 Glycine max HOM05D003015 ORTHO05D003733 5.4e-17 90.9 100 48.0
Glyma.14G010200 Glycine max HOM05D003015 ORTHO05D003733 9.1e-17 90.1 100 48.0
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 1.6e-16 89.4 102 48.0
A04p22550 Brassica napus HOM05D003015 ORTHO05D003733 1.6e-16 89.4 102 48.0
A08p35690 Brassica napus HOM05D002022 ORTHO05D002056 1.6e-16 89.4 100 48.0
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 1.6e-16 89.4 102 48.0
C08p02980 Brassica napus HOM05D003015 ORTHO05D003733 1.6e-16 89.4 100 48.0
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 1.6e-16 89.4 102 48.0
BolC8t47098H Brassica oleracea HOM05D003015 ORTHO05D003733 1.6e-16 89.4 100 48.0
BraA04t17800Z Brassica rapa HOM05D003015 ORTHO05D003733 1.6e-16 89.4 102 48.0
BraA08t35476Z Brassica rapa HOM05D003015 ORTHO05D003733 1.6e-16 89.4 100 48.0
Glyma.13G076300 Glycine max HOM05D003015 ORTHO05D003733 1.6e-16 89.4 100 48.0
Glyma.20G050200 Glycine max HOM05D003015 ORTHO05D003733 1.6e-16 89.4 100 48.0
Phvul.008G282900 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 1.6e-16 89.4 100 48.0
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 2.0e-16 89.0 100 48.0
BcaB03g13399 Brassica carinata HOM05D003015 ORTHO05D003733 2.0e-16 89.0 100 48.0
CiPaw.05G153000 Carya illinoinensis HOM05D003015 ORTHO05D003733 2.0e-16 89.0 100 47.0
CiPaw.14G062400 Carya illinoinensis HOM05D003015 ORTHO05D003733 2.0e-16 89.0 100 47.0
Hund12125 Selenicereus undatus HOM05D003015 ORTHO05D003733 2.0e-16 89.0 100 48.0
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 2.0e-16 89.0 100 48.0
VMungo0647G0404 Vigna mungo HOM05D003015 ORTHO05D003733 2.0e-16 89.0 100 48.0
EL10Ac3g06500 Beta vulgaris HOM05D003015 ORTHO05D003733 2.7e-16 88.6 100 48.0
BcaB06g28319 Brassica carinata HOM05D003015 ORTHO05D003733 2.7e-16 88.6 102 47.1
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 2.7e-16 88.6 100 47.0
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 3.5e-16 88.2 100 47.0
Medtr3g079200 Medicago truncatula HOM05D003015 ORTHO05D003733 3.5e-16 88.2 100 47.0
Duzib147G1171 Durio zibethinus HOM05D003015 ORTHO05D003733 4.5e-16 87.8 100 47.0
Lj6g0027942 Lotus japonicus HOM05D003015 ORTHO05D003733 4.5e-16 87.8 100 47.0
MD16G1006600 Malus domestica HOM05D003015 ORTHO05D003733 4.5e-16 87.8 100 47.0
Psat5g112760 Pisum sativum HOM05D003015 ORTHO05D003733 4.5e-16 87.8 100 47.0
QL01p027360 Quercus lobata HOM05D003015 ORTHO05D003733 4.5e-16 87.8 100 47.0
TWI31G1171 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 4.5e-16 87.8 100 48.0
arahy.Tifrunner.gnm1.ann1.42246I Arachis hypogaea HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 47.0
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 46.0
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 46.0
Dinv14472 Davidia involucrata HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 46.0
Duzib264G0696 Durio zibethinus HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 47.0
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 46.0
Lalb_Chr06g0171271 Lupinus albus HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 46.0
Lalb_Chr21g0314561 Lupinus albus HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 46.0
TWI75G0619 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 48.0
vmacro02998 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 46.0
vmacro06938 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 5.9e-16 87.4 100 46.0
Ca_16230_v3 Cicer arietinum L. HOM05D003015 ORTHO05D003733 7.7e-16 87.0 100 47.0
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 7.7e-16 87.0 100 47.0
Lj5A264T26 Lonicera japonica HOM05D003015 ORTHO05D003733 7.7e-16 87.0 100 47.0
Manes.02G122600 Manihot esculenta HOM05D003015 ORTHO05D003733 7.7e-16 87.0 100 47.0
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 7.7e-16 87.0 100 47.0
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 7.7e-16 87.0 100 47.0
Sabra09G0029100 Salix brachista HOM05D003015 ORTHO05D003733 7.7e-16 87.0 100 46.0
Sabra09G0029300 Salix brachista HOM05D003015 ORTHO05D003733 7.7e-16 87.0 100 46.0
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 1.0e-15 86.7 100 46.0
Hma1.2p1_0227F.1_g096180 Hydrangea macrophylla HOM05D003015 ORTHO05D003733 1.0e-15 86.7 100 46.0
MD01G1110000 Malus domestica HOM05D003015 ORTHO05D003733 1.0e-15 86.7 100 47.0
Thecc.01G073800 Theobroma cacao HOM05D003015 ORTHO05D003733 1.0e-15 86.7 100 47.0
TPR.G14378 Trifolium pratense HOM05D003015 ORTHO05D003733 1.0e-15 86.7 100 47.0
COL.COLO4_11589 Corchorus olitorius HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 46.0
MELO3C004123.2 Cucumis melo HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 45.0
CsaV3_2G007640 Cucumis sativus L. HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 45.0
Gohir.A02G151000 Gossypium hirsutum HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 47.0
Gohir.D03G029400 Gossypium hirsutum HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 47.0
Gorai.003G031000 Gossypium raimondii HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 47.0
Lsat_1_v5_gn_9_120400 Lactuca sativa HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 46.0
Rhsim13G0073800 Rhododendron simsii HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 45.0
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 45.0
SHI06627 Sapria himalayana HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 46.0
SHI07211 Sapria himalayana HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 46.0
Sc20g0003200 Simmondsia chinensis HOM05D003015 ORTHO05D003733 1.3e-15 86.3 100 47.0
Actinidia38840 Actinidia chinensis HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 46.0
CSS0005232 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 46.0
CSS0018492 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 45.0
CSS0039767 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 45.0
ClCG02G014360 Citrullus lanatus HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 45.0
Ciclev10028282m.g Citrus clementina HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 46.0
Eucgr.J01948 Eucalyptus grandis HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 45.0
HanXRQChr01g0027201 Helianthus annuus HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 46.0
MD07G1175800 Malus domestica HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 47.0
Os06g0170500 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 46.0
Sed0025661 Sechium edule HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 45.0
GSVIVG01024807001 Vitis vinifera HOM05D003015 ORTHO05D003733 1.7e-15 85.9 100 46.0
DCAR_006673 Daucus carota HOM05D003015 ORTHO05D003733 2.3e-15 85.5 100 46.0
Atru.chr3.4062 Acer truncatum HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 45.0
CANSAT35G0599 Cannabis sativa HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 45.0
FvH4_4g11590 Fragaria vesca HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 44.0
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 47.0
FAN07G1978 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 44.0
FAN12G3854 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 44.0
FAN17G0963 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 44.0
FAN17G3087 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 47.0
Potri.009G041400 Populus trichocarpa HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 45.0
Potri.009G041600 Populus trichocarpa HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 45.0
RcHm_v2.0_Chr4g0446281 Rosa chinensis HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 47.0
TAR402G0004 Trochodendron aralioides HOM05D003015 ORTHO05D003733 2.9e-15 85.1 100 45.0
Duzib168G1740 Durio zibethinus HOM05D003015 ORTHO05D003733 3.8e-15 84.7 100 46.0
FAN22G0757 Fragaria x ananassa HOM05D003015 ORTHO05D003733 3.8e-15 84.7 100 44.0
Lsat_1_v5_gn_7_76100 Lactuca sativa HOM05D003015 ORTHO05D003733 3.8e-15 84.7 100 44.0
Mapoly0103s0034 Marchantia polymorpha HOM05D003015 ORTHO05D003733 3.8e-15 84.7 100 47.0
Os07g0281000 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 3.8e-15 84.7 100 45.0
TAR636G2105 Trochodendron aralioides HOM05D003015 ORTHO05D003733 3.8e-15 84.7 100 45.0
Aqoxy1G00721 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 5.0e-15 84.3 100 45.0
Nitab4.5_0000244g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 5.0e-15 84.3 100 44.0
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 6.6e-15 84.0 100 44.0
FAN12G3049 Fragaria x ananassa HOM05D003015 ORTHO05D003733 6.6e-15 84.0 103 45.6
Lj2A1075T34 Lonicera japonica HOM05D003015 ORTHO05D003733 6.6e-15 84.0 100 46.0
CDE04G0464 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 8.6e-15 83.6 100 44.0
Cc02_g23110 Coffea canephora HOM05D003015 ORTHO05D003733 8.6e-15 83.6 100 45.0
ECA240G0521 Erigeron canadensis HOM05D003015 ORTHO05D003733 8.6e-15 83.6 100 45.0
HanXRQChr11g0338781 Helianthus annuus HOM05D003015 ORTHO05D003733 8.6e-15 83.6 100 45.0
Zm00001eb375430 Zea mays HOM05D003015 ORTHO05D003733 8.6e-15 83.6 100 45.0
Nn2g13601 Nelumbo nucifera HOM05D003015 ORTHO05D003733 1.1e-14 83.2 100 46.0
Nn3g19364 Nelumbo nucifera HOM05D003015 ORTHO05D003733 1.1e-14 83.2 100 46.0
Dinv36322 Davidia involucrata HOM05D003015 ORTHO05D003733 1.5e-14 82.8 100 44.0
Solyc04g017710.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 1.5e-14 82.8 100 43.0
Sopen04g008800 Solanum pennellii HOM05D003015 ORTHO05D003733 1.5e-14 82.8 100 43.0
Oeu045924.1 Olea europaea HOM05D003015 ORTHO05D003733 1.9e-14 82.4 100 44.0
Pp3c2_11360 Physcomitrium patens HOM05D003015 ORTHO05D003733 2.5e-14 82.0 100 45.0
SEGI_12275 Sequoiadendron giganteum HOM05D003015 ORTHO05D003733 2.5e-14 82.0 100 44.0
unitig_747.g21268 Utricularia gibba HOM05D003015 ORTHO05D003733 2.5e-14 82.0 100 43.0
Oeu049810.1 Olea europaea HOM05D003015 ORTHO05D003733 3.3e-14 81.6 100 44.0
PSO339G6468 Papaver somniferum HOM05D003015 ORTHO05D003733 3.3e-14 81.6 100 43.0
PSO384G4602 Papaver somniferum HOM05D003015 ORTHO05D003733 3.3e-14 81.6 100 43.0
Solyc10g079190.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 3.3e-14 81.6 100 43.0
Sopen10g029840 Solanum pennellii HOM05D003015 ORTHO05D003733 3.3e-14 81.6 100 43.0
HPP92_010595 Vanilla planifolia HOM05D003015 ORTHO05D003733 3.3e-14 81.6 100 44.0
ATR0584G134 Amborella trichopoda HOM05D003015 ORTHO05D003733 4.2e-14 81.3 100 43.0
ATR0584G244 Amborella trichopoda HOM05D003015 ORTHO05D003733 4.2e-14 81.3 100 43.0
COL.COLO4_32624 Corchorus olitorius HOM05D003015 ORTHO05D003733 4.2e-14 81.3 101 46.5
Nitab4.5_0012695g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 4.2e-14 81.3 100 42.0
CBR_g479 Chara braunii HOM05D003015 ORTHO05D003733 5.5e-14 80.9 100 45.0
Thhalv10015561m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 5.5e-14 80.9 100 46.0
AagrBONN_evm.TU.Sc2ySwM_117.2733 Anthoceros agrestis HOM05D003015 ORTHO05D003733 7.2e-14 80.5 100 44.0
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 7.2e-14 80.5 100 43.0
Nitab4.5_0001618g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 7.2e-14 80.5 100 42.0
Nitab4.5_0005031g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 7.2e-14 80.5 100 42.0
Peaxi162Scf00130g01131 Petunia axillaris HOM05D003015 ORTHO05D003733 9.5e-14 80.1 100 42.0
PGSC0003DMG400008145 Solanum tuberosum HOM05D003015 ORTHO05D003733 9.5e-14 80.1 100 42.0
SGA_v2.0_scaffold42G15905 Striga asiatica HOM05D003015 ORTHO05D003733 9.5e-14 80.1 100 43.0
SGA_v2.0_scaffold8G04438 Striga asiatica HOM05D003015 ORTHO05D003733 9.5e-14 80.1 100 43.0
MSTRG.27859 Avicennia marina HOM05D003015 ORTHO05D003733 1.2e-13 79.7 100 42.0
Migut.N00830 Erythranthe guttata HOM05D003015 ORTHO05D003733 2.1e-13 79.0 100 42.0
FAN10G3991 Fragaria x ananassa HOM05D003015 ORTHO05D003733 3.6e-13 78.2 101 41.6
FAN06G0288 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.7e-13 77.8 101 40.6
RcHm_v2.0_Chr1g0337351 Rosa chinensis HOM05D003015 ORTHO05D003733 1.0e-12 76.6 101 40.6
ECA236G1797 Erigeron canadensis HOM05D003015 ORTHO05D003733 1.4e-12 76.3 97 43.3
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 1.8e-12 75.9 100 43.0
FvH4_7g07370 Fragaria vesca HOM05D003015 ORTHO05D003733 2.3e-12 75.5 101 39.6
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 4.0e-12 74.7 101 45.5
AT5G07060 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 6.8e-12 73.9 100 44.0
Migut.N00829 Erythranthe guttata HOM05D003015 ORTHO05D003733 8.9e-12 73.6 100 40.0
Actinidia25137 Actinidia chinensis HOM05D003015 ORTHO05D003733 1.5e-11 72.8 50 64.0
Eucgr.L01880 Eucalyptus grandis HOM05D003015 ORTHO05D003733 2.6e-11 72.0 50 62.0
SMO239G0105 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 2.6e-11 72.0 100 41.0
Pp3c14_6200 Physcomitrium patens HOM05D003015 ORTHO05D003733 5.7e-11 70.9 100 42.0
TAR625G0082 Trochodendron aralioides HOM05D003015 ORTHO05D003733 7.5e-11 70.5 88 45.5
HanXRQChr02g0055711 Helianthus annuus HOM05D003015 ORTHO05D003733 9.8e-11 70.1 50 62.0
Cpa.g.sc112.66 Carica papaya HOM05D003015 ORTHO05D003733 1.3e-10 69.7 50 60.0
TAR633G0037 Trochodendron aralioides HOM05D003015 ORTHO05D003733 2.2e-10 68.9 50 58.0
BraA10t45186Z Brassica rapa HOM05D003015 ORTHO05D003733 4.9e-10 67.8 101 43.6
A10p31400 Brassica napus HOM05D003015 ORTHO05D003733 6.3e-10 67.4 89 44.9
Cre02.g075650 Chlamydomonas reinhardtii HOM05D003015 ORTHO05D003733 4.1e-09 64.7 101 38.6
SMO001G0006 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 7.0e-09 63.9 93 39.8
CARHR204800 Cardamine hirsuta HOM05D003015 ORTHO05D003733 1.6e-08 62.8 78 43.6
PSO832G4426 Papaver somniferum HOM05D003015 ORTHO05D003733 5.9e-08 60.8 100 37.0
C04p21240 Brassica napus HOM05D003015 ORTHO05D003733 7.8e-08 60.5 46 56.5
PGSC0003DMG400029225 Solanum tuberosum HOM05D003015 ORTHO05D003733 2.9e-07 58.5 50 54.0
PSO063G2829 Papaver somniferum HOM05D003015 ORTHO05D003733 5.0e-07 57.8 100 37.0
DCAR_025343 Daucus carota HOM05D003015 ORTHO05D003733 1.1e-06 56.6 93 40.9
PSO017G6476 Papaver somniferum HOM05D003015 ORTHO05D003733 1.1e-06 56.6 50 52.0
PSO478G1696 Papaver somniferum HOM05D003015 ORTHO05D003733 1.5e-06 56.2 50 50.0
TAR633G2094 Trochodendron aralioides HOM05D003015 ORTHO05D003733 2.5e-06 55.5 50 50.0


User provided reference genes

Program Settings