Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 1.6e-253 879.0 468 100.0
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 1.8e-156 556.6 453 70.0
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 9.0e-156 554.3 442 69.2
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.0e-154 550.8 450 70.4
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 1.8e-151 540.0 482 63.5
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 1.8e-151 540.0 453 67.8
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 8.7e-151 537.7 449 69.0
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 3.3e-150 535.8 451 69.0
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 7.4e-150 534.6 459 66.9
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 9.6e-150 534.3 457 66.5
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 8.2e-149 531.2 449 67.0
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 1.1e-148 530.8 442 67.2
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 1.4e-148 530.4 442 67.6
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 2.4e-148 529.6 460 66.5
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 5.3e-148 528.5 445 69.4
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 6.9e-148 528.1 450 66.4
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 9.0e-148 527.7 451 68.5
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 7.6e-147 524.6 437 68.6
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.3e-146 523.9 451 68.1
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 1.3e-146 523.9 447 66.9
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 1.7e-146 523.5 450 66.2
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 2.9e-146 522.7 476 63.2
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.9e-146 521.9 467 63.2
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 8.4e-146 521.2 453 64.2
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 1.1e-145 520.8 448 65.2
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 1.9e-145 520.0 441 66.0
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 3.2e-145 519.2 447 68.0
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 4.2e-145 518.8 485 62.5
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 9.3e-145 517.7 457 65.6
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 1.2e-144 517.3 445 66.5
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 1.6e-144 516.9 442 65.2
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 2.1e-144 516.5 446 64.3
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 2.1e-144 516.5 462 65.2
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 2.7e-144 516.2 476 60.5
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 3.5e-144 515.8 445 65.6
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 7.9e-144 514.6 467 62.3
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 3.0e-143 512.7 477 62.7
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.9e-142 510.0 480 61.2
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 2.5e-142 509.6 477 62.9
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 5.7e-142 508.4 449 64.8
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 5.7e-142 508.4 452 65.7
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 9.7e-142 507.7 468 64.5
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 2.8e-141 506.1 443 62.8
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.4e-140 503.8 443 64.1
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 3.1e-140 502.7 445 66.3
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 3.1e-140 502.7 435 64.8
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 2.0e-139 500.0 444 63.5
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 4.5e-139 498.8 466 61.2
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 1.3e-138 497.3 449 62.8
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 6.5e-138 495.0 477 62.5
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 8.5e-138 494.6 440 64.1
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 1.4e-137 493.8 448 60.9
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 5.5e-137 491.9 437 62.9
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 7.2e-137 491.5 421 68.9
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 9.4e-137 491.1 436 63.1
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 3.0e-135 486.1 445 62.2
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 4.3e-134 482.3 439 61.0
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 7.4e-134 481.5 458 61.4
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 9.7e-134 481.1 492 57.9
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 8.2e-133 478.0 464 62.9
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 4.1e-132 475.7 439 65.1
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 1.2e-131 474.2 473 56.7
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 4.5e-131 472.2 436 60.3
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 1.3e-130 470.7 441 58.3
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 2.9e-130 469.5 470 58.7
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 2.9e-130 469.5 451 60.1
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 2.5e-129 466.5 445 60.2
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 4.2e-129 465.7 465 55.7
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 7.2e-129 464.9 450 58.0
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 2.7e-128 463.0 446 60.8
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 7.9e-128 461.5 455 59.3
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 1.0e-127 461.1 461 55.7
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 2.3e-127 459.9 421 63.4
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 6.7e-127 458.4 449 55.5
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 3.7e-125 452.6 461 54.9
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 9.1e-124 448.0 463 57.9
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 5.5e-121 438.7 442 54.3
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 1.2e-120 437.6 469 53.3
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 2.7e-120 436.4 474 56.5
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 4.7e-120 435.6 377 67.9
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 8.0e-120 434.9 605 47.6
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 7.4e-118 428.3 442 59.7
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 1.7e-117 427.2 448 54.2
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 2.6e-115 419.9 332 72.3
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 4.5e-115 419.1 482 50.8
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 1.0e-114 417.9 445 58.2
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 1.0e-114 417.9 377 65.5
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 2.8e-109 399.8 461 51.0
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 2.4e-108 396.7 332 67.8
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 4.5e-107 392.5 319 65.5
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 3.0e-103 379.8 328 64.3
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 6.3e-101 372.1 401 53.6
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 3.0e-95 353.2 350 61.7
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 2.2e-93 347.1 393 57.8
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 1.6e-91 340.9 324 65.1
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 3.3e-89 333.2 311 63.3
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.8e-87 327.4 407 49.6
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 3.2e-84 316.6 398 48.2
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.0e-82 309.3 267 67.8
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.1e-76 291.6 329 50.8
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 2.8e-72 276.9 268 64.9
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 1.4e-71 274.6 273 56.0
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.2e-61 240.7 434 39.6
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 1.2e-54 218.4 279 48.0
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 2.6e-54 217.2 590 30.5
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 7.6e-54 215.7 369 45.0
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 2.1e-51 207.6 209 56.9
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 9.0e-47 192.2 344 41.9
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 8.7e-42 175.6 255 47.8
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 1.6e-40 171.4 96 85.4
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 8.1e-40 169.1 96 83.3
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.1e-39 168.7 99 79.8
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.1e-36 158.7 145 62.8
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 3.5e-35 153.7 170 57.6
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.6e-30 137.5 179 58.1
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 1.4e-28 131.7 186 52.2
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 3.7e-24 117.1 169 53.8
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.1e-23 115.5 97 61.9
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 3.8e-21 107.1 113 54.9
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 7.2e-20 102.8 130 50.8
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.1e-17 95.5 125 45.6
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 1.1e-17 95.5 55 78.2
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.7e-16 90.5 92 48.9
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.8e-15 88.2 343 28.3
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 2.4e-15 87.8 45 84.4
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 2.0e-14 84.7 51 78.4
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 2.0e-14 84.7 51 78.4
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 6.5e-13 79.7 49 75.5
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 2.1e-11 74.7 81 44.4
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 6.1e-11 73.2 47 70.2
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 2.6e-09 67.8 56 55.4
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 1.7e-08 65.1 55 67.3
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 1.7e-08 65.1 38 76.3
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 4.8e-08 63.5 83 44.6
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 6.3e-08 63.2 41 78.0
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 6.3e-08 63.2 33 87.9
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 2.0e-06 58.2 46 63.0


User provided reference genes

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