Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.4e-274 949.1 537 100.0
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 2.1e-217 759.2 542 80.4
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.7e-204 715.7 544 76.7
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.9e-203 711.8 542 74.9
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 6.2e-201 704.5 555 75.3
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 4.9e-198 694.9 541 75.2
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.9e-197 693.0 542 74.5
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 9.2e-197 690.6 542 74.5
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.0e-195 687.2 540 72.6
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.3e-195 686.0 543 72.7
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 6.6e-195 684.5 539 75.9
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 2.5e-194 682.6 543 74.8
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-193 679.9 544 73.9
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 2.8e-193 679.1 545 74.9
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.8e-193 679.1 542 74.5
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 7.6e-191 671.0 555 73.2
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 9.9e-191 670.6 542 74.9
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.4e-189 666.8 546 72.9
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 2.4e-189 666.0 540 72.2
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.4e-189 666.0 543 74.6
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 5.4e-189 664.8 537 73.7
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 7.1e-189 664.5 539 72.9
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.6e-188 663.3 545 73.4
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 3.0e-187 659.1 537 73.7
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.9e-186 656.4 550 71.1
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.9e-186 656.4 538 71.4
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.3e-185 653.7 543 73.8
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.3e-185 653.7 544 72.8
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 3.6e-185 652.1 542 70.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.3e-184 648.3 540 70.7
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.6e-183 646.0 588 67.9
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.6e-183 646.0 588 67.9
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 2.9e-182 642.5 544 70.8
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.9e-182 641.7 532 71.1
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.9e-181 639.8 545 70.6
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 5.4e-181 638.3 546 72.0
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 7.1e-181 637.9 543 72.2
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.1e-178 630.6 535 73.5
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.5e-178 630.2 544 70.4
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 4.8e-177 625.2 567 68.8
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-176 623.2 556 69.4
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.4e-173 613.6 493 73.4
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.4e-173 612.8 554 68.8
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 5.5e-173 611.7 557 68.4
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 5.5e-173 611.7 542 69.6
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.9e-171 605.5 554 69.5
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 5.1e-171 605.1 544 67.5
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.1e-170 604.0 546 68.7
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.5e-170 603.6 543 67.8
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.3e-170 602.1 554 69.3
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 9.6e-170 600.9 542 69.6
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 3.7e-169 599.0 501 72.5
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 6.2e-169 598.2 542 70.1
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 6.2e-169 598.2 502 72.7
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.1e-168 597.4 543 68.5
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.1e-168 597.4 545 65.9
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.0e-168 595.5 555 68.8
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.3e-168 595.1 554 68.8
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 3.8e-166 589.0 543 67.8
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 2.5e-165 586.3 577 64.6
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.2e-164 583.9 554 63.7
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 3.5e-164 582.4 548 67.3
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 6.0e-164 581.6 532 66.9
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.9e-162 576.6 527 67.9
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 5.7e-162 575.1 545 66.8
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 2.1e-161 573.2 544 67.1
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 6.3e-161 571.6 584 61.1
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.9e-160 568.2 584 61.8
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 9.0e-160 567.8 535 61.1
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.5e-159 565.5 553 62.0
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 7.6e-159 564.7 543 67.4
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.7e-158 563.5 550 66.7
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 7.2e-157 558.1 559 63.3
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.0e-155 554.3 358 81.6
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 3.3e-154 549.3 484 68.6
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 4.3e-154 548.9 512 67.2
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 5.7e-154 548.5 545 59.3
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 7.4e-154 548.1 543 64.3
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 7.4e-154 548.1 537 64.8
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.3e-153 547.4 574 58.5
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.6e-153 547.0 551 65.5
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.8e-153 546.2 553 60.6
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 4.1e-152 542.3 565 63.7
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 9.0e-152 541.2 559 63.1
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 3.4e-151 539.3 533 61.9
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 5.9e-151 538.5 567 58.0
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.0e-150 537.7 511 67.3
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.7e-150 537.0 514 66.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 3.2e-149 532.7 551 57.7
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.2e-149 531.6 577 60.5
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.6e-148 530.4 527 67.6
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.6e-148 529.3 549 63.4
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 3.6e-148 529.3 461 72.7
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 7.9e-148 528.1 548 64.4
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 3.4e-143 512.7 549 62.1
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 4.5e-143 512.3 551 61.9
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 4.5e-143 512.3 551 61.9
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 2.9e-142 509.6 552 61.6
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 5.0e-142 508.8 554 61.4
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.5e-141 505.4 545 63.3
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.3e-139 500.0 837 44.1
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.6e-138 496.5 543 60.6
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 7.4e-138 495.0 536 60.6
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 7.4e-138 495.0 554 61.2
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 8.2e-137 491.5 545 61.3
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-136 491.1 546 58.1
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.1e-136 489.6 526 59.7
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 5.3e-136 488.8 548 61.9
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.7e-134 483.8 515 65.4
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.6e-130 469.9 468 67.7
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 5.7e-130 468.8 545 57.6
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 9.7e-130 468.0 549 57.0
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.1e-128 464.5 580 54.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 1.8e-128 463.8 537 58.3
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.2e-127 461.1 486 60.9
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.1e-125 454.5 545 52.3
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.5e-125 454.1 546 58.6
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 6.8e-123 445.3 412 72.1
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 9.8e-122 441.4 538 55.9
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.7e-118 430.6 363 76.6
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 3.6e-116 422.9 563 50.3
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 4.7e-116 422.5 552 53.3
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.8e-115 420.6 554 51.4
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.6e-114 416.8 327 67.9
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.4e-112 411.0 542 49.8
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 7.0e-112 408.7 535 54.4
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 7.0e-112 408.7 535 54.4
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.0e-103 380.6 549 49.7
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 7.8e-103 378.6 441 59.9
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.3e-102 377.1 550 49.3
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.0e-102 376.7 550 48.9
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.6e-102 375.6 549 49.0
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.6e-102 375.2 549 49.4
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.8e-100 370.2 424 56.6
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.2e-98 364.8 520 53.8
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 5.8e-98 362.5 549 46.3
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 6.4e-97 359.0 323 71.5
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 7.0e-96 355.5 549 46.3
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 1.0e-86 325.1 195 79.5
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.3e-85 319.7 352 49.7
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 4.7e-84 316.2 365 65.2
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 5.2e-75 286.2 309 60.2
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.9e-72 277.7 365 58.9
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.8e-67 261.2 335 48.1
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.3e-67 259.6 350 54.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.6e-61 239.6 507 41.0
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.3e-59 233.0 245 61.6
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.2e-42 178.7 177 67.2
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.4e-40 171.8 166 65.1
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-38 163.7 242 45.0
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.1e-37 162.2 101 72.3
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 3.0e-30 137.5 267 42.7
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 2.0e-29 134.8 212 50.9
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 6.9e-27 126.3 205 51.2
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.5e-26 123.6 103 76.7
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.0e-25 122.5 314 30.9
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-23 115.5 172 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.4e-22 112.1 140 42.1
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.3e-20 103.2 206 39.3
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 3.8e-17 94.0 56 80.4
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 4.2e-16 90.5 51 78.4
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 5.5e-16 90.1 54 72.2
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.2e-16 89.7 107 56.1
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-15 88.6 110 59.1
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-15 88.2 113 58.4
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-15 88.2 74 67.6
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-15 88.2 74 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.2e-14 83.6 227 36.1
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.8e-14 82.8 209 42.6
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.2e-13 82.4 78 59.0
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 2.8e-12 77.8 59 61.0
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.7e-12 77.4 73 58.9
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.8e-12 77.0 91 49.5
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 5.9e-10 70.1 94 53.2
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 3.2e-08 64.3 64 54.7
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 3.2e-08 64.3 86 41.9
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 7.2e-08 63.2 153 38.6
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.2e-07 62.4 54 61.1
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.1e-07 60.1 122 30.3


User provided reference genes

Program Settings