Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.2e-230 802.7 389 100.0
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 6.5e-192 674.1 353 91.2
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.1e-191 673.3 353 90.9
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 1.0e-189 666.8 358 89.1
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 1.4e-189 666.4 358 88.8
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 3.0e-189 665.2 353 90.7
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 3.0e-189 665.2 353 90.7
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.7e-189 664.1 353 90.4
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 1.1e-188 663.3 358 89.1
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 6.3e-187 657.5 344 91.3
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 6.3e-187 657.5 353 88.1
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.8e-186 656.0 351 89.5
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 6.9e-186 654.1 349 89.7
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 9.1e-186 653.7 361 87.5
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 2.6e-185 652.1 354 88.4
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 3.8e-184 648.3 354 87.6
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 5.0e-184 647.9 353 87.8
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 6.5e-184 647.5 349 89.1
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 8.5e-184 647.1 349 88.8
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 8.5e-184 647.1 350 88.3
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 8.5e-184 647.1 350 88.0
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.1e-183 646.7 350 88.3
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 1.9e-183 646.0 353 87.3
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 3.2e-183 645.2 358 86.9
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 7.2e-183 644.0 359 86.6
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 7.2e-183 644.0 358 85.8
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 9.4e-183 643.7 349 87.4
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 1.6e-182 642.9 350 87.4
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.1e-182 642.5 350 88.0
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 2.1e-182 642.5 354 87.3
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.7e-182 641.3 353 87.8
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 1.0e-181 640.2 360 86.1
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 1.4e-181 639.8 359 85.8
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 8.8e-181 637.1 353 87.0
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 8.8e-181 637.1 355 86.2
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 1.1e-180 636.7 344 88.7
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.1e-178 630.2 365 83.6
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 2.4e-178 629.0 349 86.8
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 2.4e-178 629.0 359 84.7
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 3.1e-178 628.6 407 76.9
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 5.3e-178 627.9 368 82.9
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 5.3e-178 627.9 360 83.1
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 1.2e-177 626.7 387 80.1
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.2e-177 626.7 354 84.7
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.5e-177 626.3 347 87.3
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 7.7e-177 624.0 378 80.7
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.0e-176 623.6 354 85.9
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.0e-176 623.6 358 84.6
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 3.8e-176 621.7 400 78.0
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.1e-175 620.2 358 84.4
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 7.2e-175 617.5 344 86.9
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 9.4e-175 617.1 361 82.8
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 1.2e-174 616.7 343 87.8
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.6e-174 616.3 332 89.5
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.0e-173 613.6 349 84.8
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.0e-173 613.6 349 84.8
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 2.3e-173 612.5 374 81.0
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 3.9e-173 611.7 390 77.9
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 6.7e-173 610.9 347 86.5
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 1.1e-172 610.1 319 90.6
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 3.1e-170 602.1 351 82.1
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 1.2e-169 600.1 356 82.3
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.0e-169 599.4 363 80.4
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 2.6e-169 599.0 354 82.5
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 4.5e-169 598.2 335 86.0
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 5.9e-169 597.8 352 83.2
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 7.7e-169 597.4 354 82.5
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.3e-168 596.7 367 81.5
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 8.5e-168 594.0 356 81.7
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 6.8e-165 584.3 363 79.9
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 5.7e-164 581.3 354 80.5
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 6.3e-163 577.8 345 82.0
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 3.1e-162 575.5 398 73.1
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 4.1e-162 575.1 347 81.8
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 5.9e-161 571.2 359 78.6
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 7.7e-161 570.9 308 87.7
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 6.5e-160 567.8 335 82.7
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.5e-159 565.8 326 84.0
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 2.7e-158 562.4 366 76.2
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.0e-157 560.5 450 65.1
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.4e-156 555.1 359 76.9
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 5.7e-156 554.7 344 77.3
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.4e-154 550.1 331 82.2
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 4.1e-154 548.5 320 83.8
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 5.9e-153 544.7 352 78.7
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 5.9e-153 544.7 329 77.2
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 4.7e-150 535.0 347 74.1
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 3.0e-149 532.3 387 70.3
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.5e-148 530.0 371 72.5
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 2.2e-147 526.2 348 76.1
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 4.1e-146 521.9 351 73.8
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 1.6e-145 520.0 354 74.3
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.7e-144 516.5 349 75.1
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 6.1e-142 508.1 344 75.0
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 1.8e-141 506.5 310 74.8
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 6.2e-134 481.5 310 72.3
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 3.7e-131 472.2 289 79.6
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.7e-129 466.1 353 67.1
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 3.0e-128 462.6 283 79.2
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.4e-122 443.0 238 88.2
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 1.2e-121 440.7 324 63.0
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 6.0e-121 438.3 327 67.0
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 2.3e-120 436.4 348 66.4
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 5.6e-119 431.8 231 88.7
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 6.2e-118 428.3 332 63.0
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 4.9e-115 418.7 239 85.8
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 1.1e-114 417.5 217 91.2
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 7.1e-114 414.8 321 66.7
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 2.3e-112 409.8 227 85.9
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 2.3e-112 409.8 227 85.9
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 5.1e-112 408.7 214 89.7
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 7.3e-111 404.8 226 86.3
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 4.0e-109 399.1 344 62.2
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 5.4e-106 388.7 224 84.4
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 2.5e-103 379.8 227 82.4
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 6.4e-99 365.2 425 47.3
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 2.5e-82 310.1 223 69.1
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 7.4e-71 271.9 195 71.3
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 6.7e-64 248.8 211 61.6
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 3.8e-59 233.0 129 86.8
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 2.5e-58 230.3 269 50.6
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 3.6e-57 226.5 352 40.9
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 2.7e-49 200.3 117 81.2
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 4.7e-49 199.5 114 81.6
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 7.5e-47 192.2 122 75.4
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.7e-41 173.7 101 82.2
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 5.7e-39 166.0 94 80.9
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.9e-35 153.7 121 64.5
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 8.6e-35 152.1 83 84.3
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.7e-27 127.9 95 68.4
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.3e-27 127.5 70 88.6
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 8.0e-25 119.0 68 80.9
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.4e-23 113.2 77 71.4
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 4.4e-23 113.2 73 75.3
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 7.3e-18 95.9 57 77.2
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.3e-16 90.9 60 73.3
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 4.9e-14 83.2 77 58.4
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 5.4e-13 79.7 93 50.5
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 2.1e-12 77.8 54 72.2
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 4.7e-09 66.6 31 90.3
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 6.2e-09 66.2 34 76.5
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 3.1e-08 63.9 38 78.9
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 3.1e-08 63.9 38 78.9
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 6.8e-08 62.8 44 65.9


User provided reference genes

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