Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 3.7e-279 964.1 465 100.0
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 1.4e-79 301.2 274 61.7
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.1e-76 290.0 274 59.1
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.0e-74 285.0 274 58.8
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.6e-74 282.3 274 58.0
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 4.7e-72 276.2 274 56.6
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.0e-71 275.0 273 56.8
CAN.G1648.1 Capsicum annuum HOM05D000306 ORTHO05D000410 8.0e-64 248.8 172 72.1
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 1.1e-52 211.8 247 49.0
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 1.4e-52 211.5 252 49.2
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.4e-52 211.5 161 68.3
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 9.2e-52 208.8 252 46.4
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 1.6e-51 208.0 273 44.7
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.6e-51 208.0 238 49.6
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.7e-51 207.2 282 44.7
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 2.7e-51 207.2 232 48.7
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 7.8e-51 205.7 249 47.4
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 7.8e-51 205.7 215 53.0
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 1.0e-50 205.3 277 44.8
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 1.3e-50 204.9 242 49.2
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.3e-50 204.9 217 50.2
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 1.3e-50 204.9 235 49.4
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.9e-50 203.4 238 49.2
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 3.9e-50 203.4 238 48.7
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 5.1e-50 203.0 233 49.4
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 6.6e-50 202.6 217 51.6
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.5e-49 201.4 235 48.9
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.5e-49 200.7 238 49.2
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 4.3e-49 199.9 233 48.9
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 5.6e-49 199.5 255 47.8
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 5.6e-49 199.5 238 49.2
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.6e-48 198.0 247 45.7
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 1.6e-48 198.0 257 44.4
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 2.1e-48 197.6 238 48.7
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.8e-48 197.2 291 43.0
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.1e-47 195.3 232 48.3
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 1.1e-47 195.3 217 48.8
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 1.8e-47 194.5 250 45.2
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 1.8e-47 194.5 217 49.3
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.3e-47 194.1 235 45.5
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 4.0e-47 193.4 290 42.4
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 4.0e-47 193.4 321 40.5
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 4.0e-47 193.4 218 49.1
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 5.2e-47 193.0 229 48.0
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 5.2e-47 193.0 229 48.0
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 6.8e-47 192.6 285 43.5
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.2e-46 191.8 252 43.3
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 2.6e-46 190.7 294 42.9
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 4.4e-46 189.9 217 49.8
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 5.8e-46 189.5 217 49.3
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 7.6e-46 189.1 300 41.3
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 7.6e-46 189.1 258 43.4
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 7.6e-46 189.1 217 48.4
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.3e-45 188.3 215 48.4
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 1.7e-45 188.0 285 43.2
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 2.2e-45 187.6 286 42.0
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 2.2e-45 187.6 258 43.0
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 2.2e-45 187.6 269 40.9
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 2.2e-45 187.6 217 47.9
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 3.8e-45 186.8 247 45.7
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 3.8e-45 186.8 325 38.2
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 4.9e-45 186.4 215 47.0
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.1e-44 185.3 215 46.5
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.1e-44 185.3 263 42.6
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 1.1e-44 185.3 254 43.7
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 1.1e-44 185.3 257 42.8
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.1e-44 185.3 233 45.5
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.4e-44 184.9 285 40.0
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 1.9e-44 184.5 217 46.5
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 3.2e-44 183.7 249 45.0
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 3.2e-44 183.7 249 45.0
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 3.2e-44 183.7 249 45.0
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 3.2e-44 183.7 228 44.7
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 4.1e-44 183.3 215 47.9
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 4.1e-44 183.3 269 40.5
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 5.4e-44 183.0 235 43.8
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 5.4e-44 183.0 219 48.4
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 9.2e-44 182.2 220 46.4
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.2e-43 181.8 235 44.7
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 1.2e-43 181.8 269 42.0
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 1.6e-43 181.4 229 45.0
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 1.6e-43 181.4 249 42.2
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 2.1e-43 181.0 217 47.0
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.1e-43 181.0 219 45.7
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.1e-43 181.0 257 43.2
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 2.7e-43 180.6 255 43.1
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 2.7e-43 180.6 278 41.0
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.5e-43 180.3 229 45.9
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 4.6e-43 179.9 215 46.5
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 4.6e-43 179.9 157 58.6
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 4.6e-43 179.9 213 46.0
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 6.0e-43 179.5 278 41.7
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 6.0e-43 179.5 265 41.9
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 7.8e-43 179.1 236 46.2
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.0e-42 178.7 249 41.8
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.0e-42 178.7 249 41.4
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.0e-42 178.7 249 41.8
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 1.0e-42 178.7 249 41.4
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 1.0e-42 178.7 224 43.3
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 1.0e-42 178.7 221 46.2
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 2.3e-42 177.6 250 40.8
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 2.3e-42 177.6 267 41.9
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 2.3e-42 177.6 258 41.1
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 6.6e-42 176.0 111 73.9
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 1.1e-41 175.3 174 54.6
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 3.3e-41 173.7 247 41.3
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 7.3e-41 172.6 222 45.5
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 7.3e-41 172.6 245 42.0
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.2e-40 171.8 274 39.8
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 2.1e-40 171.0 122 68.0
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 2.1e-40 171.0 250 40.4
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.8e-40 170.6 281 37.0
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 8.1e-40 169.1 113 69.0
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 4.0e-39 166.8 252 42.5
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 4.0e-39 166.8 214 42.1
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 4.0e-39 166.8 123 64.2
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 6.9e-39 166.0 231 42.0
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.2e-38 165.2 114 68.4
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 4.4e-38 163.3 238 42.0
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 4.4e-38 163.3 236 39.8
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 1.7e-37 161.4 125 61.6
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 7.8e-35 152.5 218 39.9
CAN.G65.146 Capsicum annuum HOM05D002676 ORTHO05D003194 8.7e-34 149.1 141 55.3
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.9e-33 147.9 235 40.9
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 9.6e-33 145.6 229 40.6
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.8e-32 144.1 246 37.4
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 9.0e-31 139.0 229 37.6
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.0e-30 137.9 232 39.2
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.3e-29 135.2 181 45.3
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.5e-27 127.1 93 62.4
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 1.0e-26 125.6 119 50.4
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.9e-26 123.6 85 67.1
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 6.7e-26 122.9 62 91.9
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 1.4e-23 115.2 75 66.7
CAN.G17.2 Capsicum annuum HOM05D001594 ORTHO05D002862 1.7e-21 108.2 120 53.3
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 3.8e-21 107.1 95 55.8
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 1.1e-20 105.5 200 35.0
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 6.7e-18 96.3 62 71.0
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.5e-17 95.1 293 28.3
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 6.9e-15 86.3 112 39.3
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.2e-14 85.5 47 83.0
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 2.2e-13 81.3 106 43.4
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 1.4e-12 78.6 123 40.7
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 9.3e-12 75.9 219 27.9
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.0e-10 72.4 51 66.7
CAN.G1598.7 Capsicum annuum HOM05D000045 ORTHO05D000067 8.2e-08 62.8 46 56.5
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 4.1e-07 60.5 159 27.7
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 5.3e-07 60.1 37 67.6
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 9.0e-07 59.3 60 53.3
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 9.0e-07 59.3 59 50.8
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 2.6e-06 57.8 33 69.7
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 7.6e-06 56.2 112 32.1


User provided reference genes

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