Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 1.3e-63 246.1 120 100.0
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 1.4e-39 166.4 89 89.9
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.2e-33 144.1 84 82.1
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.1e-32 142.5 87 78.2
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 1.8e-31 139.4 75 86.7
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 1.3e-29 133.3 84 77.4
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.2e-29 132.5 79 82.3
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.0e-28 127.5 79 78.5
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.7e-26 122.9 80 73.8
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 2.2e-26 122.5 62 91.9
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 2.8e-21 105.5 81 65.4
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 6.3e-21 104.4 80 63.8
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.9e-18 95.5 83 59.0
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 6.5e-18 94.4 80 60.0
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 6.5e-18 94.4 83 59.0
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.1e-17 93.6 116 44.8
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 2.5e-17 92.4 83 56.6
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 4.2e-17 91.7 88 54.5
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 9.4e-17 90.5 82 54.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 9.4e-17 90.5 83 55.4
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 9.4e-17 90.5 83 55.4
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 9.4e-17 90.5 83 55.4
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 9.4e-17 90.5 83 55.4
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 1.2e-16 90.1 79 57.0
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.6e-16 89.7 84 56.0
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.1e-16 89.4 116 44.0
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.7e-16 89.0 65 64.6
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 4.7e-16 88.2 80 55.0
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 6.1e-16 87.8 87 54.0
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 1.4e-15 86.7 106 46.2
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 4.0e-15 85.1 97 45.4
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 6.8e-15 84.3 101 45.5
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 6.8e-15 84.3 62 62.9
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 6.8e-15 84.3 62 62.9
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 6.8e-15 84.3 116 42.2
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 8.8e-15 84.0 60 65.0
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 1.2e-14 83.6 61 62.3
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 1.2e-14 83.6 62 66.1
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 1.5e-14 83.2 66 59.1
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 2.0e-14 82.8 62 61.3
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 2.0e-14 82.8 96 45.8
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 2.6e-14 82.4 102 47.1
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 3.4e-14 82.0 62 61.3
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 3.4e-14 82.0 105 45.7
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 4.4e-14 81.6 62 61.3
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 4.4e-14 81.6 62 59.7
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 4.4e-14 81.6 102 44.1
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 4.4e-14 81.6 84 48.8
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 4.4e-14 81.6 115 40.9
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 4.4e-14 81.6 62 64.5
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 5.7e-14 81.3 66 59.1
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 9.8e-14 80.5 60 63.3
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 9.8e-14 80.5 60 63.3
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 9.8e-14 80.5 104 45.2
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 9.8e-14 80.5 63 61.9
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 1.3e-13 80.1 103 44.7
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 1.3e-13 80.1 104 43.3
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 1.7e-13 79.7 102 43.1
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.2e-13 79.3 68 54.4
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 2.8e-13 79.0 61 60.7
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 2.8e-13 79.0 66 56.1
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 2.8e-13 79.0 62 59.7
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 3.7e-13 78.6 66 57.6
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 3.7e-13 78.6 66 57.6
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 4.8e-13 78.2 65 58.5
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 4.8e-13 78.2 102 43.1
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 6.3e-13 77.8 78 50.0
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 1.1e-12 77.0 62 58.1
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.1e-12 77.0 82 47.6
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.1e-12 77.0 62 59.7
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 1.1e-12 77.0 63 58.7
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.4e-12 76.6 61 59.0
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 1.8e-12 76.3 65 53.8
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 1.8e-12 76.3 78 51.3
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.8e-12 76.3 110 40.9
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.8e-12 76.3 62 59.7
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.8e-12 76.3 60 61.7
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 2.4e-12 75.9 86 47.7
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 3.1e-12 75.5 96 49.0
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 4.1e-12 75.1 62 58.1
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 4.1e-12 75.1 61 59.0
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 7.0e-12 74.3 93 48.4
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 9.1e-12 73.9 91 48.4
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 9.1e-12 73.9 62 58.1
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 1.6e-11 73.2 87 40.2
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 1.6e-11 73.2 61 55.7
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.6e-11 73.2 95 45.3
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.0e-11 72.8 58 55.2
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.0e-11 72.8 102 43.1
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 2.7e-11 72.4 58 58.6
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 2.7e-11 72.4 58 58.6
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 2.7e-11 72.4 58 58.6
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 3.5e-11 72.0 59 55.9
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 3.5e-11 72.0 58 58.6
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 4.5e-11 71.6 114 39.5
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 4.5e-11 71.6 58 56.9
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 7.7e-11 70.9 58 53.4
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.3e-10 70.1 95 44.2
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.3e-10 70.1 80 46.2
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.7e-10 69.7 95 44.2
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 1.7e-10 69.7 64 53.1
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.9e-10 68.9 60 55.0
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 5.0e-10 68.2 95 45.3
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 6.6e-10 67.8 60 55.0
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 6.6e-10 67.8 60 53.3
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 1.5e-09 66.6 60 55.0
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 2.5e-09 65.9 59 55.9
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 2.5e-09 65.9 59 55.9
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.5e-09 65.9 60 51.7
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.5e-09 65.9 81 40.7
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 3.3e-09 65.5 59 55.9
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 3.3e-09 65.5 59 55.9
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 3.3e-09 65.5 59 55.9
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 3.3e-09 65.5 60 55.0
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 4.2e-09 65.1 100 38.0
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 7.2e-09 64.3 79 48.1
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 9.5e-09 63.9 66 50.0
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.6e-08 63.2 52 55.8
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.4e-07 60.1 62 53.2
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 2.3e-07 59.3 61 47.5
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 5.2e-07 58.2 57 49.1
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 8.9e-07 57.4 64 50.0
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 2.0e-06 56.2 92 37.0
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 2.0e-06 56.2 64 50.0
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 3.4e-06 55.5 64 46.9
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 4.4e-06 55.1 84 41.7


User provided reference genes

Program Settings