Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 8.9e-97 357.1 198 100.0
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.1e-81 307.0 198 79.8
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 2.6e-80 302.4 198 84.3
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 9.3e-70 267.3 198 77.8
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.0e-68 263.8 194 73.2
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 5.1e-68 261.5 194 71.6
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.8e-52 209.9 202 58.4
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 2.2e-50 203.0 187 59.4
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 7.7e-48 194.5 192 57.3
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.2e-45 187.2 188 56.4
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 1.6e-45 186.8 99 89.9
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 3.6e-45 185.7 190 57.9
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 1.1e-43 180.6 184 54.9
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.1e-43 180.6 206 62.1
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.1e-43 180.6 159 68.6
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.5e-43 179.5 188 54.8
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.7e-43 178.3 183 60.7
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 5.7e-43 178.3 183 60.1
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 9.7e-43 177.6 188 56.9
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 1.3e-42 177.2 206 57.8
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.3e-42 177.2 183 57.9
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 1.7e-42 176.8 201 55.2
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 2.8e-42 176.0 207 56.5
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 6.3e-42 174.9 172 63.4
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 8.2e-42 174.5 206 54.4
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 1.8e-41 173.3 201 58.7
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 2.4e-41 172.9 207 53.6
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 4.1e-41 172.2 193 52.8
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.1e-41 172.2 119 69.7
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.1e-41 172.2 119 69.7
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 5.3e-41 171.8 196 57.7
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 5.3e-41 171.8 120 71.7
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 9.1e-41 171.0 185 55.1
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 9.1e-41 171.0 213 50.2
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.2e-40 170.6 124 67.7
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.5e-40 170.2 124 67.7
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 2.6e-40 169.5 124 70.2
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 3.4e-40 169.1 194 51.5
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 5.9e-40 168.3 128 66.4
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 1.0e-39 167.5 203 55.2
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 1.3e-39 167.2 200 51.0
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 1.3e-39 167.2 183 58.5
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 2.9e-39 166.0 207 53.1
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 6.5e-39 164.9 204 58.8
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 8.5e-39 164.5 204 52.9
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.1e-38 164.1 208 52.4
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 3.2e-38 162.5 169 54.4
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.4e-38 161.0 201 54.2
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.4e-38 161.0 201 54.2
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 1.6e-37 160.2 149 58.4
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 1.6e-37 160.2 214 48.6
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 2.7e-37 159.5 124 70.2
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 3.6e-37 159.1 213 47.9
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 3.6e-37 159.1 206 51.5
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 6.1e-37 158.3 153 55.6
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 6.1e-37 158.3 153 55.6
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 6.1e-37 158.3 185 61.1
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.0e-36 157.5 197 48.7
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 1.0e-36 157.5 201 53.7
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.0e-36 157.5 191 55.5
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 1.0e-36 157.5 128 64.1
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 1.4e-36 157.1 188 55.9
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 2.3e-36 156.4 188 50.0
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 3.0e-36 156.0 111 68.5
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 5.1e-36 155.2 124 65.3
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 8.8e-36 154.5 202 48.0
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 8.8e-36 154.5 202 48.0
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 8.8e-36 154.5 98 74.5
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 8.8e-36 154.5 170 54.1
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 1.1e-35 154.1 120 66.7
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 1.1e-35 154.1 222 45.9
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 1.1e-35 154.1 120 66.7
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 3.3e-35 152.5 116 67.2
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 4.4e-35 152.1 120 65.8
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 5.7e-35 151.8 175 52.6
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 5.7e-35 151.8 205 53.7
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 7.4e-35 151.4 205 54.1
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 9.7e-35 151.0 218 46.3
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.3e-34 150.6 189 50.3
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 2.2e-34 149.8 173 57.8
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 2.8e-34 149.4 119 67.2
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 3.7e-34 149.1 120 65.0
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 3.7e-34 149.1 173 59.5
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 3.7e-34 149.1 173 59.5
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 3.7e-34 149.1 183 54.1
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 3.7e-34 149.1 92 76.1
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 4.8e-34 148.7 119 68.1
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.8e-33 146.7 205 47.8
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 2.4e-33 146.4 174 58.6
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 3.1e-33 146.0 111 66.7
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 3.1e-33 146.0 131 61.1
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 4.1e-33 145.6 111 66.7
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 9.1e-33 144.4 128 64.8
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 9.1e-33 144.4 111 68.5
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.2e-32 144.1 174 58.6
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 1.2e-32 144.1 208 48.6
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.2e-32 144.1 227 42.7
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-32 143.3 197 53.3
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 2.0e-32 143.3 197 53.3
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 2.0e-32 143.3 205 45.4
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 3.5e-32 142.5 207 52.7
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 4.5e-32 142.1 176 57.4
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 5.9e-32 141.7 202 48.5
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 5.9e-32 141.7 204 46.6
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 5.9e-32 141.7 206 51.5
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.7e-31 140.2 201 50.2
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 1.7e-31 140.2 201 50.2
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 1.7e-31 140.2 184 48.4
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.2e-31 139.8 154 54.5
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 6.5e-31 138.3 184 49.5
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 8.5e-31 137.9 213 45.5
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 8.5e-31 137.9 208 44.2
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 1.1e-30 137.5 170 51.8
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 1.5e-30 137.1 198 52.0
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 1.5e-30 137.1 198 52.0
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 1.9e-30 136.7 170 57.1
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 2.5e-30 136.3 173 58.4
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 2.5e-30 136.3 213 45.1
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 2.5e-30 136.3 126 60.3
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 4.2e-30 135.6 201 46.8
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 7.2e-30 134.8 89 71.9
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 9.4e-30 134.4 185 48.1
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.2e-29 134.0 221 44.8
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 2.1e-29 133.3 126 61.1
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 2.7e-29 132.9 126 59.5
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.0e-28 131.0 164 48.2
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 1.8e-28 130.2 193 44.6
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 1.8e-28 130.2 195 43.6
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 3.0e-28 129.4 123 57.7
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 4.0e-28 129.0 218 42.2
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 6.7e-28 128.3 194 52.6
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 1.5e-27 127.1 126 60.3
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 2.0e-27 126.7 173 45.7
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 3.3e-27 125.9 218 49.5
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.4e-27 125.6 186 50.5
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.4e-27 125.6 192 46.9
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 5.7e-27 125.2 203 44.3
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 9.7e-27 124.4 237 45.6
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 9.7e-27 124.4 224 39.7
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.7e-26 123.6 125 60.8
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.7e-26 123.6 125 60.8
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 2.8e-26 122.9 224 42.9
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 3.7e-26 122.5 214 43.5
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 8.2e-26 121.3 202 42.6
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.1e-25 120.9 203 43.8
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.4e-25 120.6 207 43.5
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.8e-25 120.2 200 46.0
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.8e-25 120.2 192 44.3
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 2.4e-25 119.8 208 47.1
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 3.1e-25 119.4 203 43.3
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 3.5e-24 115.9 100 65.0
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 4.5e-24 115.5 119 58.0
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 4.5e-24 115.5 119 58.0
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 1.0e-23 114.4 99 59.6
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 1.0e-23 114.4 99 59.6
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 3.8e-23 112.5 200 42.0
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 5.0e-23 112.1 109 56.9
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 5.0e-23 112.1 109 56.9
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 8.5e-23 111.3 158 44.9
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.1e-22 110.9 122 54.9
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 2.7e-21 106.3 59 81.4
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.7e-21 106.3 93 61.3
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 4.7e-21 105.5 59 78.0
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 4.7e-21 105.5 56 85.7
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 8.0e-21 104.8 186 46.2
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 2.3e-20 103.2 127 49.6
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 8.8e-20 101.3 125 49.6
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.3e-18 97.4 197 38.1
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 1.8e-17 93.6 173 46.8
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 5.4e-17 92.0 162 39.5
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 1.5e-14 84.0 84 56.0
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 1.8e-12 77.0 39 82.1
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 8.8e-12 74.7 210 34.3
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 7.0e-09 65.1 63 57.1
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 4.5e-08 62.4 82 48.8
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 2.9e-07 59.7 72 48.6
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 5.0e-07 58.9 142 34.5
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 6.6e-07 58.5 126 38.1
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 6.6e-07 58.5 126 38.1
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 1.5e-06 57.4 72 47.2
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 2.5e-06 56.6 39 64.1
PSO384G1636 Papaver somniferum HOM05D000185 ORTHO05D000105 5.6e-06 55.5 126 37.3


User provided reference genes

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