Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p72480 Brassica napus HOM05D003015 ORTHO05D017435 1.5e-61 239.2 110 100.0
A10p31790 Brassica napus HOM05D016739 ORTHO05D017435 5.4e-51 204.1 100 93.0
BraA10t45224Z Brassica rapa HOM05D016739 ORTHO05D017435 5.4e-51 204.1 100 93.0
BolC9t59991H Brassica oleracea HOM05D016739 ORTHO05D017435 1.3e-33 146.4 67 98.5
BcaC06g32143 Brassica carinata HOM05D003015 ORTHO05D017435 6.8e-30 134.0 76 80.3
C09p72530 Brassica napus HOM05D003015 ORTHO05D017435 5.8e-29 131.0 104 60.6
A10p31830 Brassica napus HOM05D003015 ORTHO05D042787 8.3e-28 127.1 104 59.6
BraA10t45228Z Brassica rapa HOM05D003015 ORTHO05D042787 8.3e-28 127.1 104 59.6
AT5G04210 Arabidopsis thaliana HOM05D003015 ORTHO05D017435 5.1e-17 91.3 89 50.6
C09p72560 Brassica napus HOM05D003015 ORTHO05D017435 8.1e-15 84.0 52 69.2
Thhalv10015561m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 1.2e-13 80.1 96 41.7
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 5.8e-13 77.8 94 41.5
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 5.8e-13 77.8 94 41.5
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 1.3e-12 76.6 94 40.4
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 1.3e-12 76.6 94 40.4
BcaB06g28319 Brassica carinata HOM05D003015 ORTHO05D003733 2.2e-12 75.9 94 41.5
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 2.2e-12 75.9 94 40.4
A04p22550 Brassica napus HOM05D003015 ORTHO05D003733 2.2e-12 75.9 94 40.4
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 2.2e-12 75.9 94 40.4
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 2.2e-12 75.9 94 40.4
BraA04t17800Z Brassica rapa HOM05D003015 ORTHO05D003733 2.2e-12 75.9 94 40.4
Aa31LG1G6670 Aethionema arabicum HOM05D003015 ORTHO05D003733 2.9e-12 75.5 94 39.4
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 2.9e-12 75.5 94 40.4
Sp1g06110 Schrenkiella parvula HOM05D003015 ORTHO05D003733 2.9e-12 75.5 94 39.4
A08p35690 Brassica napus HOM05D002022 ORTHO05D002056 3.8e-12 75.1 94 39.4
C08p02980 Brassica napus HOM05D003015 ORTHO05D003733 3.8e-12 75.1 94 39.4
BolC8t47098H Brassica oleracea HOM05D003015 ORTHO05D003733 3.8e-12 75.1 94 39.4
BraA08t35476Z Brassica rapa HOM05D003015 ORTHO05D003733 3.8e-12 75.1 94 39.4
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 3.8e-12 75.1 94 38.3
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 4.9e-12 74.7 94 39.4
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 4.9e-12 74.7 96 39.6
BcaB03g13399 Brassica carinata HOM05D003015 ORTHO05D003733 1.1e-11 73.6 94 38.3
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 1.1e-11 73.6 94 37.2
AT5G07060 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 1.4e-11 73.2 96 36.5
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 1.4e-11 73.2 94 37.2
Zm00001eb375430 Zea mays HOM05D003015 ORTHO05D003733 1.4e-11 73.2 94 37.2
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 1.9e-11 72.8 97 40.2
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 2.4e-11 72.4 94 38.3
Potri.009G041400 Populus trichocarpa HOM05D003015 ORTHO05D003733 2.4e-11 72.4 94 36.2
Potri.009G041600 Populus trichocarpa HOM05D003015 ORTHO05D003733 2.4e-11 72.4 94 36.2
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 5.4e-11 71.2 94 37.2
Os06g0170500 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 7.1e-11 70.9 94 35.1
Os07g0281000 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 7.1e-11 70.9 94 36.2
PSO339G6468 Papaver somniferum HOM05D003015 ORTHO05D003733 7.1e-11 70.9 94 38.3
PSO384G4602 Papaver somniferum HOM05D003015 ORTHO05D003733 7.1e-11 70.9 94 38.3
HPP92_010595 Vanilla planifolia HOM05D003015 ORTHO05D003733 7.1e-11 70.9 94 36.2
Sabra09G0029100 Salix brachista HOM05D003015 ORTHO05D003733 9.3e-11 70.5 94 35.1
Sabra09G0029300 Salix brachista HOM05D003015 ORTHO05D003733 9.3e-11 70.5 94 35.1
EL10Ac3g06500 Beta vulgaris HOM05D003015 ORTHO05D003733 1.2e-10 70.1 94 36.2
Glyma.02G303600 Glycine max HOM05D003015 ORTHO05D003733 1.2e-10 70.1 94 35.1
Lsat_1_v5_gn_7_76100 Lactuca sativa HOM05D003015 ORTHO05D003733 1.2e-10 70.1 94 36.2
QL01p027360 Quercus lobata HOM05D003015 ORTHO05D003733 1.2e-10 70.1 94 36.2
Hund12125 Selenicereus undatus HOM05D003015 ORTHO05D003733 1.2e-10 70.1 94 35.1
GSVIVG01024807001 Vitis vinifera HOM05D003015 ORTHO05D003733 1.2e-10 70.1 94 36.2
CSS0018492 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.6e-10 69.7 94 36.2
CSS0039767 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.6e-10 69.7 94 36.2
Dinv36322 Davidia involucrata HOM05D003015 ORTHO05D003733 1.6e-10 69.7 94 35.1
HanXRQChr01g0027201 Helianthus annuus HOM05D003015 ORTHO05D003733 1.6e-10 69.7 94 35.1
Manes.02G122600 Manihot esculenta HOM05D003015 ORTHO05D003733 1.6e-10 69.7 94 35.1
SGA_v2.0_scaffold8G04438 Striga asiatica HOM05D003015 ORTHO05D003733 1.6e-10 69.7 94 35.1
Actinidia38840 Actinidia chinensis HOM05D003015 ORTHO05D003733 2.1e-10 69.3 94 35.1
ATR0584G244 Amborella trichopoda HOM05D003015 ORTHO05D003733 2.1e-10 69.3 94 36.2
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 2.1e-10 69.3 94 36.2
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 2.1e-10 69.3 94 36.2
DCAR_006673 Daucus carota HOM05D003015 ORTHO05D003733 2.1e-10 69.3 94 34.0
HanXRQChr11g0338781 Helianthus annuus HOM05D003015 ORTHO05D003733 2.1e-10 69.3 94 34.0
Lsat_1_v5_gn_9_120400 Lactuca sativa HOM05D003015 ORTHO05D003733 2.1e-10 69.3 94 35.1
Sc20g0003200 Simmondsia chinensis HOM05D003015 ORTHO05D003733 2.1e-10 69.3 94 34.0
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 2.7e-10 68.9 94 35.1
Duzib168G1740 Durio zibethinus HOM05D003015 ORTHO05D003733 2.7e-10 68.9 94 34.0
Migut.N00830 Erythranthe guttata HOM05D003015 ORTHO05D003733 2.7e-10 68.9 94 35.1
Lj6g0027942 Lotus japonicus HOM05D003015 ORTHO05D003733 2.7e-10 68.9 94 35.1
TWI31G1171 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 2.7e-10 68.9 94 33.0
TWI75G0619 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 2.7e-10 68.9 94 33.0
unitig_747.g21268 Utricularia gibba HOM05D003015 ORTHO05D003733 2.7e-10 68.9 94 34.0
Ciclev10028282m.g Citrus clementina HOM05D003015 ORTHO05D003733 3.5e-10 68.6 94 34.0
Hma1.2p1_0227F.1_g096180 Hydrangea macrophylla HOM05D003015 ORTHO05D003733 3.5e-10 68.6 94 35.1
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 3.5e-10 68.6 94 34.0
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 3.5e-10 68.6 94 34.0
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 3.5e-10 68.6 94 34.0
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 35.1
CiPaw.05G153000 Carya illinoinensis HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 36.2
CiPaw.14G062400 Carya illinoinensis HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 36.2
Dinv14472 Davidia involucrata HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 35.1
FvH4_4g11590 Fragaria vesca HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 34.0
FAN07G1978 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 34.0
FAN12G3854 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 34.0
FAN17G0963 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 34.0
Lj5A264T26 Lonicera japonica HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 34.0
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 35.1
Lalb_Chr06g0171271 Lupinus albus HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 35.1
Medtr3g079200 Medicago truncatula HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 34.0
Thecc.01G073800 Theobroma cacao HOM05D003015 ORTHO05D003733 4.6e-10 68.2 94 35.1
Atru.chr3.4062 Acer truncatum HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 35.1
ATR0584G134 Amborella trichopoda HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 35.1
Ca_16230_v3 Cicer arietinum L. HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 34.0
COL.COLO4_11589 Corchorus olitorius HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 33.0
MELO3C004123.2 Cucumis melo HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 34.0
CsaV3_2G007640 Cucumis sativus L. HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 34.0
Eucgr.J01948 Eucalyptus grandis HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 34.0
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 34.0
FAN22G0757 Fragaria x ananassa HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 34.0
Lj2A1075T34 Lonicera japonica HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 33.0
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 35.1
Psat5g112760 Pisum sativum HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 34.0
Rhsim13G0073800 Rhododendron simsii HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 36.2
RcHm_v2.0_Chr4g0446281 Rosa chinensis HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 34.0
SHI06627 Sapria himalayana HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 33.0
SHI07211 Sapria himalayana HOM05D003015 ORTHO05D003733 6.0e-10 67.8 94 33.0
CANSAT35G0599 Cannabis sativa HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 35.1
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
ClCG02G014360 Citrullus lanatus HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
ECA240G0521 Erigeron canadensis HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
FAN17G3087 Fragaria x ananassa HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
Glyma.13G076300 Glycine max HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
Glyma.14G010200 Glycine max HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
Glyma.20G050200 Glycine max HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
Lalb_Chr21g0314561 Lupinus albus HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 35.1
MD01G1110000 Malus domestica HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
MD07G1175800 Malus domestica HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
MD16G1006600 Malus domestica HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 33.0
Nn2g13601 Nelumbo nucifera HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 35.1
Nn3g19364 Nelumbo nucifera HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 35.1
Phvul.008G282900 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
Sed0025661 Sechium edule HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
SGA_v2.0_scaffold42G15905 Striga asiatica HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
VMungo0647G0404 Vigna mungo HOM05D003015 ORTHO05D003733 7.8e-10 67.4 94 34.0
arahy.Tifrunner.gnm1.ann1.42246I Arachis hypogaea HOM05D003015 ORTHO05D003733 1.0e-09 67.0 94 34.0
CDE04G0464 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 1.0e-09 67.0 94 34.0
Mapoly0103s0034 Marchantia polymorpha HOM05D003015 ORTHO05D003733 1.0e-09 67.0 94 33.0
CSS0005232 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.3e-09 66.6 94 34.0
Migut.N00829 Erythranthe guttata HOM05D003015 ORTHO05D003733 1.3e-09 66.6 94 35.1
Nitab4.5_0001618g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.3e-09 66.6 94 33.0
Nitab4.5_0005031g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.3e-09 66.6 94 33.0
TPR.G14378 Trifolium pratense HOM05D003015 ORTHO05D003733 1.3e-09 66.6 94 34.0
vmacro02998 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 1.3e-09 66.6 94 35.1
vmacro06938 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 1.3e-09 66.6 94 35.1
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 1.3e-09 66.6 94 34.0
AagrBONN_evm.TU.Sc2ySwM_117.2733 Anthoceros agrestis HOM05D003015 ORTHO05D003733 1.7e-09 66.2 94 31.9
Aqoxy1G00721 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 1.7e-09 66.2 94 35.1
AL6G17220 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 1.7e-09 66.2 91 36.3
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 1.7e-09 66.2 94 33.0
Cc02_g23110 Coffea canephora HOM05D003015 ORTHO05D003733 1.7e-09 66.2 94 33.0
Duzib147G1171 Durio zibethinus HOM05D003015 ORTHO05D003733 1.7e-09 66.2 94 34.0
Duzib264G0696 Durio zibethinus HOM05D003015 ORTHO05D003733 1.7e-09 66.2 94 34.0
Oeu045924.1 Olea europaea HOM05D003015 ORTHO05D003733 1.7e-09 66.2 94 33.0
Peaxi162Scf00130g01131 Petunia axillaris HOM05D003015 ORTHO05D003733 1.7e-09 66.2 94 33.0
PGSC0003DMG400008145 Solanum tuberosum HOM05D003015 ORTHO05D003733 1.7e-09 66.2 94 33.0
Gohir.A02G151000 Gossypium hirsutum HOM05D003015 ORTHO05D003733 2.3e-09 65.9 94 33.0
Gohir.D03G029400 Gossypium hirsutum HOM05D003015 ORTHO05D003733 2.3e-09 65.9 94 33.0
Gorai.003G031000 Gossypium raimondii HOM05D003015 ORTHO05D003733 2.3e-09 65.9 94 33.0
Oeu049810.1 Olea europaea HOM05D003015 ORTHO05D003733 2.3e-09 65.9 94 33.0
SEGI_12275 Sequoiadendron giganteum HOM05D003015 ORTHO05D003733 2.3e-09 65.9 94 35.1
Solyc04g017710.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 2.3e-09 65.9 94 31.9
Sopen04g008800 Solanum pennellii HOM05D003015 ORTHO05D003733 2.3e-09 65.9 94 31.9
MSTRG.27859 Avicennia marina HOM05D003015 ORTHO05D003733 3.0e-09 65.5 94 31.9
TAR636G2105 Trochodendron aralioides HOM05D003015 ORTHO05D003733 3.0e-09 65.5 94 35.1
RcHm_v2.0_Chr1g0337351 Rosa chinensis HOM05D003015 ORTHO05D003733 3.9e-09 65.1 95 34.7
SMO239G0105 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 3.9e-09 65.1 94 34.0
Solyc10g079190.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 3.9e-09 65.1 94 31.9
Sopen10g029840 Solanum pennellii HOM05D003015 ORTHO05D003733 3.9e-09 65.1 94 31.9
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 5.1e-09 64.7 94 33.0
CARHR204800 Cardamine hirsuta HOM05D003015 ORTHO05D003733 6.6e-09 64.3 89 37.1
TAR402G0004 Trochodendron aralioides HOM05D003015 ORTHO05D003733 6.6e-09 64.3 94 35.1
FAN06G0288 Fragaria x ananassa HOM05D003015 ORTHO05D003733 8.7e-09 63.9 95 33.7
FAN10G3991 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.1e-08 63.5 95 33.7
FvH4_7g07370 Fragaria vesca HOM05D003015 ORTHO05D003733 3.3e-08 62.0 95 33.7
PSO063G2829 Papaver somniferum HOM05D003015 ORTHO05D003733 3.3e-08 62.0 96 33.3
Cre02.g075650 Chlamydomonas reinhardtii HOM05D003015 ORTHO05D003733 4.3e-08 61.6 95 31.6
COL.COLO4_32624 Corchorus olitorius HOM05D003015 ORTHO05D003733 4.3e-08 61.6 95 31.6
Nitab4.5_0000244g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 4.3e-08 61.6 94 30.9
Nitab4.5_0012695g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 4.3e-08 61.6 94 30.9
PSO832G4426 Papaver somniferum HOM05D003015 ORTHO05D003733 4.3e-08 61.6 93 34.4
CBR_g479 Chara braunii HOM05D003015 ORTHO05D003733 2.8e-07 58.9 94 28.7
A10p31400 Brassica napus HOM05D003015 ORTHO05D003733 6.2e-07 57.8 88 34.1
BraA10t45186Z Brassica rapa HOM05D003015 ORTHO05D003733 6.2e-07 57.8 88 34.1
ECA236G1797 Erigeron canadensis HOM05D003015 ORTHO05D003733 6.9e-06 54.3 85 29.4
TAR625G0082 Trochodendron aralioides HOM05D003015 ORTHO05D003733 6.9e-06 54.3 96 31.2


User provided reference genes

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