Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1454.5 743 100.0
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 0.0e+00 1439.1 743 98.4
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 0.0e+00 1397.5 729 97.5
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1359.4 706 97.5
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1300.8 678 98.4
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1229.9 680 92.4
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 0.0e+00 1199.5 664 91.1
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 0.0e+00 1160.2 675 85.6
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 0.0e+00 1144.4 678 84.5
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 0.0e+00 1131.7 665 85.6
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 0.0e+00 1126.3 678 83.0
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 3.4e-282 974.9 673 72.4
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 3.9e-254 881.7 631 74.5
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.3e-249 866.7 681 63.0
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 6.5e-249 864.4 686 62.4
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.9e-248 862.8 687 62.3
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 6.0e-247 857.8 678 62.7
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 3.9e-246 855.1 683 62.1
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 9.6e-245 850.5 673 62.6
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.8e-244 849.0 686 59.9
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.8e-243 846.3 685 61.2
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 5.3e-243 844.7 579 76.2
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 1.5e-242 843.2 682 61.0
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.1e-240 837.0 686 60.2
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.1e-240 837.0 685 58.8
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.4e-240 836.6 687 59.5
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.5e-240 835.9 684 60.1
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 9.3e-240 833.9 684 59.9
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 9.3e-240 833.9 683 60.3
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 2.3e-238 829.3 699 58.9
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 3.9e-238 828.6 688 59.6
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 3.9e-238 828.6 681 60.1
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 6.7e-238 827.8 706 59.1
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 8.7e-238 827.4 685 59.0
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.9e-237 826.2 684 58.9
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 4.3e-237 825.1 687 59.0
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 5.7e-237 824.7 687 59.4
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.3e-236 823.5 684 58.9
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 1.3e-236 823.5 684 59.1
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-236 822.8 686 59.8
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 3.7e-236 822.0 685 59.7
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 6.3e-236 821.2 683 58.7
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 8.2e-236 820.8 686 59.9
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 8.2e-236 820.8 665 60.5
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.4e-235 819.3 684 58.5
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.1e-235 818.5 684 58.6
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 4.1e-235 818.5 685 58.2
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.9e-235 817.8 684 58.6
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.2e-234 817.0 684 59.4
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.5e-234 816.6 685 58.5
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 2.6e-234 815.8 687 58.8
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 3.4e-234 815.5 742 55.9
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.4e-234 815.5 684 58.5
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.4e-234 815.5 684 58.5
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.0e-233 813.9 686 58.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.2e-233 812.8 684 58.0
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 5.0e-233 811.6 694 58.6
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 8.5e-233 810.8 675 59.1
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.4e-232 810.1 682 59.4
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.9e-232 809.7 684 57.9
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 5.5e-232 808.1 683 58.6
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 7.2e-232 807.7 685 58.7
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.6e-231 806.6 680 58.2
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 3.6e-231 805.4 678 59.1
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 8.8e-230 800.8 667 58.5
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 2.0e-229 799.7 685 57.5
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.6e-229 799.3 699 56.7
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 3.3e-229 798.9 687 57.6
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 4.3e-229 798.5 685 57.7
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.7e-228 796.6 717 57.3
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.2e-228 796.2 684 58.0
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.7e-228 795.4 684 57.9
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 3.7e-228 795.4 682 58.8
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 8.2e-228 794.3 684 57.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 8.2e-228 794.3 684 57.7
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 8.2e-228 794.3 678 58.0
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 1.2e-226 790.4 686 58.2
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 3.4e-226 788.9 713 54.8
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 5.9e-226 788.1 683 58.6
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 5.9e-226 788.1 680 58.2
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 2.2e-225 786.2 686 57.9
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 2.7e-223 779.2 686 57.4
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 3.0e-222 775.8 654 58.7
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.9e-222 775.4 680 56.6
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.1e-221 773.9 687 56.0
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 4.4e-221 771.9 680 56.6
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 7.4e-221 771.2 677 56.3
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.1e-219 767.3 680 56.5
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 3.1e-219 765.8 683 56.8
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.6e-218 762.7 711 55.4
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.0e-215 751.1 685 55.5
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.1e-203 714.1 660 55.8
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 3.1e-203 712.6 712 52.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.0e-202 709.9 705 53.6
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 4.5e-202 708.8 584 60.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.9e-200 703.4 671 53.5
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.4e-195 686.4 664 53.2
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.6e-192 675.2 537 60.5
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 5.6e-192 675.2 606 58.4
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.0e-185 654.4 680 50.4
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.6e-176 622.1 706 47.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-174 617.1 711 47.5
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 5.8e-173 612.1 654 50.0
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.2e-172 610.1 485 62.1
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.9e-168 597.0 666 49.1
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 4.0e-166 589.3 562 54.8
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 7.1e-163 578.6 692 45.2
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.2e-162 577.8 458 59.2
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-159 567.8 684 46.8
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 6.9e-158 562.0 687 44.0
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.2e-154 551.2 466 57.9
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 5.6e-152 542.3 628 44.3
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.0e-150 536.2 459 59.9
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.7e-146 523.5 677 42.8
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.6e-143 514.2 512 51.0
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 3.8e-140 503.1 689 40.1
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 8.4e-140 501.9 377 62.3
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.8e-110 404.4 628 37.3
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 4.8e-87 326.6 295 57.6
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 4.0e-73 280.4 202 64.9
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 5.4e-70 270.0 190 65.8
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.9e-67 261.5 263 52.9
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.8e-65 255.0 365 48.2
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 5.8e-56 223.4 212 51.4
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 9.2e-46 189.5 164 57.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.6e-45 188.7 144 59.0
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-44 184.9 332 37.3
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.1e-43 182.6 512 29.5
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 7.8e-37 159.8 215 43.3
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 3.6e-34 151.0 105 68.6
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 3.6e-34 151.0 116 62.1
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 8.1e-34 149.8 127 56.7
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.2e-31 141.7 122 59.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 3.2e-30 137.9 187 43.9
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.7e-29 134.8 201 40.8
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 6.0e-29 133.7 88 70.5
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 3.0e-28 131.3 96 61.5
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.4e-25 121.7 82 69.5
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.5e-24 119.0 93 57.0
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 3.2e-22 111.3 201 32.8
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 4.6e-21 107.5 72 70.8
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 6.0e-21 107.1 153 41.8
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.5e-16 92.4 100 54.0
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 4.9e-15 87.4 81 53.1
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 1.4e-14 85.9 81 51.9
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 1.2e-13 82.8 186 30.6
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.7e-13 81.6 204 32.4
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.9e-12 77.8 73 54.8
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 7.4e-11 73.6 48 64.6
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.7e-10 71.2 132 36.4
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 6.3e-10 70.5 186 28.5
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-09 69.7 66 56.1
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.4e-09 69.3 55 54.5
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 7.7e-08 63.5 53 54.7
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.3e-07 62.8 117 32.5
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.3e-07 62.8 46 63.0
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.0e-07 60.8 66 50.0
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 1.9e-06 58.9 150 28.7
unitig_749.g13782 Utricularia gibba HOM05D004484 ORTHO05D423904 4.2e-06 57.8 38 65.8


User provided reference genes

Program Settings