Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12042 Brassica carinata HOM05D006329 ORTHO05D008357 9.6e-191 670.2 398 100.0
C04p08570 Brassica napus HOM05D006329 ORTHO05D008357 9.6e-191 670.2 398 100.0
BolC4t22452H Brassica oleracea HOM05D006329 ORTHO05D008357 2.9e-187 658.7 402 98.5
BraA05t19681Z Brassica rapa HOM05D006329 ORTHO05D008357 8.7e-184 647.1 402 92.3
A05p07160 Brassica napus HOM05D006329 ORTHO05D008357 3.3e-183 645.2 402 92.3
BcaB02g09141 Brassica carinata HOM05D006329 ORTHO05D008357 2.8e-182 642.1 403 86.8
Thhalv10016747m.g Eutrema salsugineum HOM05D006329 ORTHO05D008357 1.9e-175 619.4 404 80.7
Sp4g21490 Schrenkiella parvula HOM05D006329 ORTHO05D008357 4.8e-174 614.8 408 82.1
AL4G36440 Arabidopsis lyrata HOM05D006329 ORTHO05D008357 1.0e-168 597.0 413 79.2
Carub.0004s2119 Capsella rubella HOM05D006329 ORTHO05D008357 1.3e-166 590.1 409 80.0
CARHR133910 Cardamine hirsuta HOM05D006329 ORTHO05D008357 1.4e-165 586.6 413 78.7
AT2G39140 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 2.4e-165 585.9 411 78.1
THA.LOC104824234 Tarenaya hassleriana HOM05D006329 ORTHO05D008357 1.5e-151 540.0 397 74.8
Manes.05G201000 Manihot esculenta HOM05D006329 ORTHO05D008357 1.5e-138 496.9 333 73.6
Thecc.10G083200 Theobroma cacao HOM05D006329 ORTHO05D008357 4.2e-138 495.4 333 73.0
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 6.1e-137 491.5 398 63.8
Ciclev10031516m.g Citrus clementina HOM05D006329 ORTHO05D008357 2.3e-136 489.6 339 75.2
COL.COLO4_17136 Corchorus olitorius HOM05D006329 ORTHO05D008357 6.7e-136 488.0 333 73.0
Actinidia34805 Actinidia chinensis HOM05D006329 ORTHO05D008357 1.5e-135 486.9 334 72.5
Duzib114G0755 Durio zibethinus HOM05D006329 ORTHO05D008357 1.5e-135 486.9 334 70.4
Cc02_g10940 Coffea canephora HOM05D006329 ORTHO05D008357 2.2e-134 483.0 333 73.6
Potri.008G035500 Populus trichocarpa HOM05D006329 ORTHO05D008357 8.2e-134 481.1 331 72.2
Gohir.A10G203300 Gossypium hirsutum HOM05D006329 ORTHO05D008357 2.4e-133 479.6 336 69.9
Gohir.D10G211400 Gossypium hirsutum HOM05D006329 ORTHO05D008357 5.3e-133 478.4 336 69.6
Gorai.011G237100 Gossypium raimondii HOM05D006329 ORTHO05D008357 5.3e-133 478.4 336 69.6
QL08p054507 Quercus lobata HOM05D006329 ORTHO05D008357 7.0e-133 478.0 332 70.5
Sabra08G0023700 Salix brachista HOM05D006329 ORTHO05D008357 2.6e-132 476.1 331 71.3
Eucgr.G02867 Eucalyptus grandis HOM05D006329 ORTHO05D008357 1.3e-131 473.8 336 75.0
Nitab4.5_0001450g0040 Nicotiana tabacum HOM05D006329 ORTHO05D008357 1.3e-131 473.8 332 68.7
Nitab4.5_0001659g0150 Nicotiana tabacum HOM05D006329 ORTHO05D008357 1.7e-131 473.4 332 68.4
PGSC0003DMG400007434 Solanum tuberosum HOM05D006329 ORTHO05D008357 1.7e-131 473.4 333 69.1
QL08p054383 Quercus lobata HOM05D006329 ORTHO05D008357 2.9e-131 472.6 332 69.9
MELO3C019822.2 Cucumis melo HOM05D006329 ORTHO05D008357 8.5e-131 471.1 333 69.7
Solyc11g008360.3 Solanum lycopersicum HOM05D006329 ORTHO05D008357 8.5e-131 471.1 333 68.8
CsaV3_6G036680 Cucumis sativus L. HOM05D006329 ORTHO05D008357 1.5e-130 470.3 333 69.7
Nn6g35280 Nelumbo nucifera HOM05D006329 ORTHO05D008357 5.5e-130 468.4 332 73.2
CANSAT56G2601 Cannabis sativa HOM05D006329 ORTHO05D008357 1.2e-129 467.2 333 71.5
PGR142G3823 Punica granatum HOM05D006329 ORTHO05D008357 1.2e-129 467.2 333 68.5
Hma1.2p1_2894F.1_g329960 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 1.0e-128 464.2 333 73.3
TAR623G1379 Trochodendron aralioides HOM05D006329 ORTHO05D008357 5.2e-128 461.8 332 72.0
CiPaw.01G268700 Carya illinoinensis HOM05D006329 ORTHO05D008357 6.8e-128 461.5 329 70.5
FvH4_7g18810 Fragaria vesca HOM05D006329 ORTHO05D008357 1.2e-127 460.7 398 62.3
Haze_16856 Corylus avellana HOM05D006329 ORTHO05D008357 3.4e-127 459.1 346 70.8
FAN10G3782 Fragaria x ananassa HOM05D006329 ORTHO05D008357 3.4e-127 459.1 398 60.3
FAN06G3910 Fragaria x ananassa HOM05D006329 ORTHO05D008357 4.4e-127 458.8 398 62.1
Prupe.2G208900 Prunus persica HOM05D006329 ORTHO05D008357 4.4e-127 458.8 411 64.5
MD07G1170000 Malus domestica HOM05D006329 ORTHO05D008357 1.3e-126 457.2 409 60.6
MBI18_g02633_MAGBIO Magnolia biondii HOM05D006329 ORTHO05D008357 2.2e-126 456.4 327 69.1
Aqoxy1G01144 Aquilegia oxysepala HOM05D006329 ORTHO05D008357 2.8e-126 456.1 336 67.3
Sed0004104 Sechium edule HOM05D006329 ORTHO05D008357 2.8e-126 456.1 333 67.3
RcHm_v2.0_Chr1g0362601 Rosa chinensis HOM05D006329 ORTHO05D008357 1.4e-125 453.8 333 67.3
FAN10G0068 Fragaria x ananassa HOM05D006329 ORTHO05D008357 4.1e-125 452.2 388 60.1
Phvul.007G098900 Phaseolus vulgaris HOM05D006329 ORTHO05D008357 5.3e-125 451.8 333 67.6
SalBow6G7241 Salvia bowleyana HOM05D006329 ORTHO05D008357 5.3e-125 451.8 332 67.2
arahy.Tifrunner.gnm1.ann1.KFTR8M Arachis hypogaea HOM05D006329 ORTHO05D008357 2.9e-123 446.0 348 64.4
GSVIVG01016221001 Vitis vinifera HOM05D006329 ORTHO05D008357 2.9e-123 446.0 260 80.8
Ca_10544_v3 Cicer arietinum L. HOM05D006329 ORTHO05D008357 6.5e-123 444.9 329 66.3
Migut.F01702 Erythranthe guttata HOM05D006329 ORTHO05D008357 1.5e-122 443.7 329 66.3
Psat6g180040 Pisum sativum HOM05D006329 ORTHO05D008357 1.9e-122 443.4 328 65.9
MSTRG.389 Avicennia marina HOM05D006329 ORTHO05D008357 2.5e-122 443.0 330 68.5
TPR.G10288 Trifolium pratense HOM05D006329 ORTHO05D008357 9.4e-122 441.0 331 66.2
Glyma.10G207800 Glycine max HOM05D006329 ORTHO05D008357 1.6e-121 440.3 335 65.7
Sopen11g004170 Solanum pennellii HOM05D006329 ORTHO05D008357 6.1e-121 438.3 260 79.2
Lj5g0015116 Lotus japonicus HOM05D006329 ORTHO05D008357 3.0e-120 436.0 339 72.3
Cpa.g.sc53.128 Carica papaya HOM05D006329 ORTHO05D008357 5.2e-120 435.3 295 72.9
ClCG08G007690 Citrullus lanatus HOM05D006329 ORTHO05D008357 1.5e-119 433.7 313 68.1
Medtr1g094190 Medicago truncatula HOM05D006329 ORTHO05D008357 1.7e-118 430.3 330 65.2
EL10Ac6g14260 Beta vulgaris HOM05D006329 ORTHO05D008357 2.2e-118 429.9 260 77.7
PSO063G6532 Papaver somniferum HOM05D006329 ORTHO05D008357 2.2e-118 429.9 325 64.9
PSO339G5012 Papaver somniferum HOM05D006329 ORTHO05D008357 2.8e-118 429.5 325 64.9
Lalb_Chr21g0313671 Lupinus albus HOM05D006329 ORTHO05D008357 4.8e-118 428.7 345 62.3
CDE03G0204 Ceratophyllum demersum HOM05D006329 ORTHO05D008357 6.3e-118 428.3 329 66.3
vmacro04842 Vaccinium macrocarpon HOM05D006329 ORTHO05D008357 1.4e-117 427.2 350 72.6
Rhsim09G0148200 Rhododendron simsii HOM05D000461 ORTHO05D001829 3.1e-117 426.0 266 76.7
FAN06G0494 Fragaria x ananassa HOM05D006329 ORTHO05D008357 5.4e-117 425.2 403 58.6
HanXRQChr14g0456591 Helianthus annuus HOM05D006329 ORTHO05D008357 9.1e-117 424.5 258 79.1
Lsat_1_v5_gn_2_113040 Lactuca sativa HOM05D006329 ORTHO05D008357 2.9e-115 419.5 259 77.6
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 3.8e-115 419.1 259 77.2
Oeu013841.1 Olea europaea HOM05D006329 ORTHO05D008357 3.8e-115 419.1 312 71.2
Ah.02g128110 Amaranthus hybridus HOM05D006329 ORTHO05D008357 6.6e-115 418.3 260 75.8
Peaxi162Scf00145g01311 Petunia axillaris HOM05D006329 ORTHO05D008357 8.6e-115 417.9 358 60.3
arahy.Tifrunner.gnm1.ann1.21BGD2 Arachis hypogaea HOM05D006329 ORTHO05D008357 1.6e-113 413.7 333 62.5
CAN.G321.64 Capsicum annuum HOM05D006329 ORTHO05D008357 3.6e-113 412.5 252 78.2
ECA238G1295 Erigeron canadensis HOM05D006329 ORTHO05D001676 6.1e-113 411.8 248 77.8
Cfa001679 Carpinus fangiana HOM05D006329 ORTHO05D008357 1.2e-111 407.5 243 79.0
Zm00001eb004240 Zea mays HOM05D006329 ORTHO05D008357 2.6e-111 406.4 343 62.1
ATR0219G015 Amborella trichopoda HOM05D006329 ORTHO05D008357 5.7e-111 405.2 312 64.1
DCAR_005490 Daucus carota HOM05D006329 ORTHO05D008357 8.3e-110 401.4 297 66.0
EL10Ac4g09587 Beta vulgaris HOM05D006329 ORTHO05D008357 9.2e-109 397.9 274 70.1
Aa31LG5G20460 Aethionema arabicum HOM05D006329 ORTHO05D008357 1.2e-108 397.5 362 63.3
SGA_v2.0_scaffold51G18714 Striga asiatica HOM05D006329 ORTHO05D008357 5.9e-108 395.2 312 63.5
Hund20700 Selenicereus undatus HOM05D006329 ORTHO05D008357 2.3e-107 393.3 410 53.9
VMungo0251G3605 Vigna mungo HOM05D006329 ORTHO05D008357 5.2e-104 382.1 325 60.9
HPP92_026018 Vanilla planifolia HOM05D006329 ORTHO05D008357 1.5e-103 380.6 328 60.7
CSS0005771 Camellia sinensis var. sinensis HOM05D006329 ORTHO05D008357 2.6e-103 379.8 334 61.1
HPP92_027741 Vanilla planifolia HOM05D006329 ORTHO05D008357 1.7e-102 377.1 255 74.1
RhsimUnG0185600 Rhododendron simsii HOM05D000461 ORTHO05D001829 6.6e-99 365.2 230 77.0
AUR62002759 Chenopodium quinoa HOM05D006329 ORTHO05D008357 1.5e-95 354.0 225 76.0
Dinv31231 Davidia involucrata HOM05D006329 ORTHO05D008357 9.8e-95 351.3 255 71.0
Lalb_Chr21g0313541 Lupinus albus HOM05D006329 ORTHO05D008357 8.3e-94 348.2 210 75.7
Os03g0152700 Oryza sativa ssp. japonica HOM05D006329 ORTHO05D008357 2.4e-93 346.7 304 57.9
Lj3A938T44 Lonicera japonica HOM05D006329 ORTHO05D008357 1.1e-90 337.8 317 57.4
Mapoly0002s0007 Marchantia polymorpha HOM05D006329 ORTHO05D008357 1.7e-86 323.9 252 62.7
Pp3c7_13640 Physcomitrium patens HOM05D006329 ORTHO05D008357 9.6e-82 308.1 255 59.6
Cfa001678 Carpinus fangiana HOM05D006329 ORTHO05D008357 4.4e-79 299.3 225 72.9
SMO329G0071 Selaginella moellendorffii HOM05D006329 ORTHO05D008357 6.4e-78 295.4 232 60.8
Sc09g0006060 Simmondsia chinensis HOM05D006329 ORTHO05D008357 1.9e-66 257.3 154 77.3
FAN01G2166 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.6e-65 254.2 152 80.9
HPP92_026744 Vanilla planifolia HOM05D006329 ORTHO05D008357 8.7e-59 231.9 226 56.6
MCO14G528 Micromonas commoda HOM05D006329 ORTHO05D008357 2.1e-57 227.3 254 48.8
CBR_g29624 Chara braunii HOM05D006329 ORTHO05D008357 2.9e-54 216.9 143 70.6
Cre02.g095121 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 1.3e-46 191.4 320 38.8
PRCOL_00004574 Prasinoderma coloniale HOM05D006329 ORTHO05D008357 5.0e-46 189.5 253 44.3
AUR62014125 Chenopodium quinoa HOM05D006329 ORTHO05D008357 1.2e-39 168.3 104 76.9
Hma1.2p1_2894F.1_g329970 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 1.2e-31 141.7 82 81.7
CAN.G176.13 Capsicum annuum HOM05D006329 ORTHO05D033978 3.4e-31 140.2 83 77.1
AT3G43340 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 3.8e-30 136.7 74 90.5
Pp3s196_90 Physcomitrium patens HOM05D006329 ORTHO05D008357 5.3e-24 116.3 247 29.6
Hma1.2p1_2894F.1_g329973 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 1.2e-20 105.1 57 86.0
MCO04G216 Micromonas commoda HOM05D006329 ORTHO05D008357 4.5e-15 86.7 262 29.8
Cre07.g323550 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 2.9e-14 84.0 229 26.6
Glyma.20G182966 Glycine max HOM05D006329 ORTHO05D028485 1.1e-13 82.0 88 52.3
CAN.G184.4 Capsicum annuum HOM05D006329 ORTHO05D028485 2.7e-12 77.4 53 62.3
MCO01G641 Micromonas commoda HOM05D006329 ORTHO05D008357 7.5e-10 69.3 235 28.5
Potri.010G226901 Populus trichocarpa HOM05D006329 ORTHO05D028485 9.1e-08 62.4 51 62.7


User provided reference genes

Program Settings