Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.1e-224 783.5 541 100.0
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.9e-221 772.7 543 99.1
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.9e-221 772.7 543 99.1
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 2.7e-220 768.8 541 98.5
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 1.6e-217 759.6 543 98.3
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.9e-197 693.0 547 84.8
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.2e-189 665.6 547 84.6
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 3.3e-186 655.6 548 81.2
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 3.6e-180 635.6 546 81.3
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.8e-176 623.2 546 80.4
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 4.1e-176 622.1 550 72.7
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 5.3e-176 621.7 538 79.9
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 6.9e-176 621.3 530 84.9
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 3.8e-174 615.5 548 75.5
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.1e-173 614.0 564 77.3
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.7e-169 600.1 580 71.6
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 3.6e-164 582.4 547 69.8
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.0e-155 554.3 548 68.6
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 2.6e-154 549.7 555 68.6
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 3.3e-154 549.3 548 66.6
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-153 547.4 540 74.1
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.3e-153 547.4 540 74.1
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 2.2e-153 546.6 541 70.1
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.2e-151 540.8 549 66.1
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 4.5e-151 538.9 543 64.1
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.7e-150 537.0 550 66.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 7.2e-149 531.6 551 65.2
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 9.4e-149 531.2 546 63.9
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 6.1e-148 528.5 550 65.8
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 8.0e-148 528.1 549 68.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.0e-148 528.1 549 65.2
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.0e-147 527.7 549 62.1
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 5.2e-147 525.4 546 65.0
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 9.8e-146 521.2 548 66.2
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.2e-145 520.0 549 61.9
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 4.1e-144 515.8 548 63.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.4e-144 515.4 554 72.7
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.2e-143 514.2 555 67.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.7e-143 513.1 554 72.2
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.0e-142 511.1 553 64.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.3e-142 510.8 547 65.6
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.0e-142 508.8 554 72.4
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 5.5e-141 505.4 549 66.1
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.1e-140 503.4 549 63.0
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 3.0e-139 499.6 547 59.6
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 6.8e-139 498.4 552 57.4
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.2e-138 497.7 549 67.4
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.5e-138 497.3 533 61.5
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.6e-138 496.5 588 62.4
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.6e-138 496.5 588 62.4
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 3.4e-138 496.1 543 59.7
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-137 493.8 557 65.4
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 3.7e-137 492.7 583 64.2
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.4e-136 490.7 548 58.6
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.8e-136 490.3 533 67.7
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 5.4e-136 488.8 553 62.7
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 5.4e-136 488.8 549 65.0
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 7.0e-136 488.4 550 63.6
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 9.2e-136 488.0 561 70.1
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.6e-135 487.3 553 67.6
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.6e-135 487.3 547 58.0
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 2.7e-135 486.5 543 58.0
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 2.9e-134 483.0 541 64.1
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.9e-134 483.0 547 60.9
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 8.6e-134 481.5 548 64.8
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.5e-133 480.7 548 63.9
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.9e-133 480.3 546 59.3
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.9e-133 480.3 550 61.3
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 3.3e-133 479.6 547 61.2
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 4.3e-133 479.2 559 65.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 7.3e-133 478.4 550 65.5
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 3.0e-131 473.0 552 60.0
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.9e-131 471.5 544 54.4
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.4e-130 469.5 544 64.5
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 4.4e-130 469.2 554 64.6
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.9e-129 466.5 571 58.3
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.8e-127 458.4 533 59.8
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 3.0e-126 456.4 546 63.9
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 6.6e-126 455.3 554 59.2
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 6.6e-126 455.3 547 59.6
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.6e-126 455.3 556 64.0
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 2.8e-124 449.9 548 57.7
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 6.2e-124 448.7 548 62.2
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 4.0e-123 446.0 549 62.7
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.2e-122 444.5 488 63.9
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.5e-122 444.1 549 58.3
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.0e-122 443.7 515 64.7
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.3e-121 441.0 562 55.7
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 6.4e-121 438.7 514 61.7
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-120 437.6 587 53.3
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.9e-120 437.2 506 58.9
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.2e-119 434.5 533 63.6
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.2e-119 434.5 506 58.5
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.7e-119 433.3 551 64.2
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.3e-118 431.0 501 56.3
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.0e-118 429.9 547 49.7
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.8e-116 423.3 587 55.7
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.8e-116 423.3 575 53.0
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 3.6e-116 422.9 358 70.4
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 3.1e-115 419.9 553 49.7
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 5.2e-115 419.1 524 60.1
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 8.9e-115 418.3 562 56.8
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 3.4e-114 416.4 545 53.4
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-113 414.5 580 52.4
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 2.9e-113 413.3 539 56.4
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 7.1e-112 408.7 542 50.4
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 2.1e-111 407.1 555 58.9
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 5.1e-110 402.5 544 53.1
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.6e-106 390.2 568 47.9
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.9e-102 376.3 501 62.9
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 8.7e-102 375.2 561 55.4
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.6e-100 370.9 844 41.5
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.5e-98 364.4 551 54.3
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.5e-98 364.4 549 53.0
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 9.9e-98 361.7 489 55.6
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.7e-97 360.9 468 61.1
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 8.4e-97 358.6 471 59.7
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.4e-96 357.8 551 49.0
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 7.8e-95 352.1 551 54.1
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.7e-94 350.9 531 49.9
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.5e-93 347.8 545 44.8
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.4e-89 332.4 544 44.3
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.9e-88 330.9 562 48.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 9.3e-88 328.6 542 44.3
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.3e-88 328.6 542 44.3
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.3e-88 328.6 544 44.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.0e-87 325.9 542 43.9
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.0e-87 325.9 585 45.3
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.6e-85 319.3 326 57.4
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 6.9e-83 312.4 411 65.0
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 5.8e-82 309.3 545 40.6
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.8e-81 306.6 553 41.2
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.4e-80 303.9 447 60.4
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.0e-78 298.5 553 41.0
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 8.2e-76 288.9 195 72.3
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.2e-72 276.9 346 53.8
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.0e-70 270.4 426 45.1
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 5.1e-70 269.6 525 51.4
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.4e-66 256.9 369 60.4
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 3.2e-64 250.4 314 70.4
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 3.0e-62 243.8 307 53.4
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.4e-56 224.9 305 47.9
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 3.0e-54 217.2 373 57.9
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.8e-52 209.9 500 37.2
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 4.7e-47 193.4 282 55.7
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.6e-45 187.6 240 55.4
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 9.7e-45 185.7 374 55.1
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.7e-31 141.0 98 68.4
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.0e-29 134.8 182 64.8
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-29 133.7 235 39.1
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 7.0e-27 126.3 89 85.4
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.5e-24 117.9 89 80.9
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.4e-19 101.3 136 41.2
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.5e-18 97.1 309 29.1
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.0e-17 95.9 216 39.8
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.9e-17 94.4 214 44.9
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 9.5e-16 89.4 52 76.9
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 4.7e-15 87.0 173 42.8
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 6.8e-14 83.2 70 62.9
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 6.8e-14 83.2 70 62.9
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 8.9e-14 82.8 53 66.0
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.2e-13 82.4 54 79.6
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.6e-13 81.3 65 64.6
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 3.4e-13 80.9 70 62.9
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-12 79.0 115 46.1
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 6.4e-12 76.6 271 32.8
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.9e-11 75.1 73 57.5
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.1e-11 73.9 63 61.9
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.1e-11 73.9 66 62.1
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 7.0e-11 73.2 53 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.6e-10 70.5 262 31.7
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 7.8e-10 69.7 64 57.8
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 5.0e-09 67.0 54 61.1
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.5e-08 64.7 137 29.9
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.3e-08 63.9 217 34.6
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 1.6e-07 62.0 146 32.9
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.1e-06 57.8 207 34.8
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 4.0e-06 57.4 59 49.2


User provided reference genes

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