Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 0.0e+00 1480.3 750 100.0
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1420.6 728 98.8
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1397.9 729 97.5
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 0.0e+00 1396.7 728 97.5
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1291.9 679 97.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1233.0 680 92.1
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 0.0e+00 1203.7 665 91.6
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 0.0e+00 1166.8 676 85.8
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 0.0e+00 1149.8 679 84.5
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 0.0e+00 1137.1 666 85.6
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 0.0e+00 1131.7 679 83.2
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 2.6e-282 975.3 674 72.3
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 4.2e-256 888.3 632 75.0
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 9.1e-251 870.5 681 62.7
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 4.5e-250 868.2 686 62.4
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.9e-249 865.5 687 62.0
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 6.1e-247 857.8 678 62.2
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.0e-246 857.1 683 61.6
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 5.2e-246 854.7 580 77.1
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.5e-245 853.2 673 62.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.0e-245 852.8 686 59.9
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 3.7e-244 848.6 682 61.0
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 4.8e-244 848.2 685 60.7
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 4.5e-242 841.6 686 60.2
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.2e-241 839.3 684 59.9
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 5.0e-241 838.2 685 58.4
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 6.5e-241 837.8 687 59.0
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 2.5e-240 835.9 684 59.8
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 2.5e-240 835.9 691 60.1
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.5e-240 835.9 683 59.9
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.6e-239 833.2 706 59.3
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 6.1e-239 831.2 681 59.6
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 8.0e-239 830.9 684 58.9
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.4e-238 830.1 685 58.8
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.4e-238 830.1 699 58.4
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.8e-238 829.7 687 59.4
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 6.8e-238 827.8 687 58.7
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 8.8e-238 827.4 685 59.6
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 8.8e-238 827.4 665 60.9
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.2e-237 827.0 686 59.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.0e-237 826.2 683 58.6
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 3.4e-237 825.5 684 58.5
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 9.8e-237 823.9 684 58.5
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-236 823.5 684 58.6
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.2e-236 822.8 684 58.6
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 2.2e-236 822.8 684 58.5
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.8e-236 822.4 686 59.5
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 8.3e-236 820.8 687 58.8
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 8.3e-236 820.8 685 57.8
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.1e-235 820.5 684 58.5
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.1e-235 820.5 684 58.5
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.4e-235 820.1 684 59.1
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 3.1e-235 818.9 685 58.4
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 4.1e-235 818.5 685 59.0
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 4.1e-235 818.5 742 55.7
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 2.0e-234 816.2 686 58.2
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 5.9e-234 814.7 675 59.0
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 5.9e-234 814.7 694 58.2
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 7.7e-234 814.3 682 59.1
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.7e-233 813.1 684 57.6
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 3.8e-233 812.0 678 59.0
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 3.8e-233 812.0 683 58.3
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 8.5e-233 810.8 680 58.2
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.5e-232 810.1 684 57.5
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.5e-232 809.3 685 58.0
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 8.0e-231 804.3 667 58.5
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.0e-230 803.9 685 57.4
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.3e-230 802.7 687 57.5
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.0e-230 802.0 684 57.7
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 4.0e-230 802.0 717 57.6
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.8e-230 801.2 684 57.6
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 8.8e-230 800.8 699 56.2
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 1.2e-229 800.4 678 58.0
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-229 800.0 684 57.5
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-229 800.0 684 57.5
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.0e-229 799.7 682 58.5
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 8.3e-228 794.3 680 58.2
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 3.1e-227 792.3 686 57.7
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 4.1e-227 792.0 713 54.6
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.2e-226 790.4 683 58.3
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 3.5e-226 788.9 686 57.6
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.3e-225 786.9 654 59.0
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.9e-224 783.1 686 57.1
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 8.0e-223 777.7 680 56.6
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.0e-222 777.3 687 55.9
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 3.0e-222 775.8 680 56.8
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.2e-221 773.9 677 55.8
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 7.5e-221 771.2 680 56.6
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 6.4e-220 768.1 683 56.4
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.4e-219 766.9 711 55.6
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.5e-216 756.1 685 55.5
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.8e-205 718.4 660 55.5
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 9.9e-205 717.6 712 52.2
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 3.7e-204 715.7 705 53.9
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 4.1e-203 712.2 584 60.4
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 4.6e-202 708.8 671 53.4
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.0e-197 693.3 664 53.5
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 3.0e-193 679.5 606 58.4
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.8e-191 672.9 537 60.3
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 2.3e-185 653.3 680 50.0
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.3e-177 626.7 706 47.9
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.3e-176 622.9 711 47.5
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-174 617.5 654 50.0
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 8.4e-172 608.2 485 61.9
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.7e-169 598.6 667 49.0
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 6.2e-167 592.0 562 54.6
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 4.9e-164 582.4 692 45.1
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 6.0e-162 575.5 458 58.5
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-161 573.5 684 46.9
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 9.7e-160 568.2 687 44.1
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 5.5e-155 552.4 466 57.7
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.0e-153 548.1 628 44.7
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 9.7e-152 541.6 459 59.9
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 3.8e-148 529.6 677 42.8
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 2.2e-143 513.8 512 51.0
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.4e-142 510.4 683 40.4
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 3.2e-139 500.0 377 62.1
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 3.7e-111 406.8 629 37.0
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 4.0e-89 333.6 295 58.0
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 6.9e-73 279.6 202 64.4
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 2.1e-69 268.1 190 65.3
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.5e-67 261.2 324 46.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.8e-65 255.0 365 48.5
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 2.0e-56 224.9 212 51.4
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.9e-46 191.8 332 36.7
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 3.5e-45 187.6 164 56.7
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 3.5e-45 187.6 144 58.3
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.5e-43 182.2 513 29.0
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.1e-38 166.0 215 43.7
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.2e-34 151.8 116 62.9
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 3.7e-34 151.0 105 68.6
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 1.1e-33 149.4 127 55.9
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.7e-31 142.1 122 59.8
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 3.2e-30 137.9 187 43.9
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.2e-29 136.0 201 41.3
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.0e-28 132.9 88 69.3
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 5.1e-28 130.6 96 60.4
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-25 122.9 82 70.7
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 2.0e-24 118.6 93 55.9
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 1.4e-22 112.5 201 33.3
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.9e-22 112.1 153 41.8
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.0e-20 106.3 72 69.4
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 4.1e-17 94.4 100 53.0
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 5.0e-15 87.4 81 53.1
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 1.5e-14 85.9 81 51.9
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 5.5e-14 84.0 186 31.2
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 9.4e-14 83.2 204 32.8
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 2.1e-13 82.0 73 54.8
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 7.5e-11 73.6 48 64.6
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 2.2e-10 72.0 186 29.0
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 8.3e-10 70.1 66 54.5
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 8.3e-10 70.1 123 36.6
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.8e-09 68.9 55 52.7
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 3.5e-08 64.7 53 56.6
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.3e-07 62.8 46 63.0
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.9e-07 61.6 117 30.8
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.8e-07 61.2 66 48.5
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 2.5e-06 58.5 311 22.5
unitig_749.g13782 Utricularia gibba HOM05D004484 ORTHO05D423904 4.2e-06 57.8 38 65.8


User provided reference genes

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