Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1330.5 682 100.0
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1300.4 678 98.4
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 0.0e+00 1299.3 678 98.5
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 0.0e+00 1291.2 679 97.5
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1253.0 656 97.4
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1228.4 684 92.3
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 0.0e+00 1198.0 668 91.0
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 0.0e+00 1165.2 679 85.9
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 0.0e+00 1155.6 682 85.0
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 0.0e+00 1135.6 682 83.6
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 0.0e+00 1133.6 665 85.7
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 7.4e-284 980.3 677 72.8
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 3.2e-255 885.2 635 74.8
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.8e-251 872.1 685 63.2
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 5.0e-248 861.3 682 62.8
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 2.1e-246 855.9 689 62.1
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.8e-246 855.5 686 62.1
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.8e-246 855.5 689 62.0
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.8e-245 852.8 692 60.3
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 4.4e-244 848.2 691 61.4
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 9.8e-244 847.0 688 61.2
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 4.9e-243 844.7 675 62.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 9.2e-242 840.5 689 59.1
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.2e-241 840.1 690 60.6
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.0e-241 839.3 579 76.0
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 2.0e-241 839.3 693 59.7
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.7e-240 836.3 690 60.1
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.7e-240 836.3 689 60.5
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 3.8e-240 835.1 690 60.1
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 2.5e-239 832.4 687 60.3
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 2.1e-238 829.3 710 59.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 2.1e-238 829.3 691 59.9
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 2.8e-238 828.9 691 59.5
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 6.1e-238 827.8 689 58.9
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.0e-237 827.0 690 58.8
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 2.3e-237 825.9 699 58.9
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 4.0e-237 825.1 690 59.1
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 1.2e-236 823.5 692 60.3
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.2e-236 823.5 689 59.8
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.6e-236 822.4 689 58.8
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 5.8e-236 821.2 690 59.4
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 7.5e-236 820.8 672 60.3
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-235 820.1 690 58.4
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.7e-235 819.7 690 59.0
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.7e-235 819.7 691 58.9
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-235 819.7 690 58.6
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 2.2e-235 819.3 748 56.1
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-235 819.3 686 59.8
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.9e-235 818.9 690 58.6
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 4.9e-235 818.1 689 58.1
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-234 816.6 690 58.4
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-234 816.6 690 58.4
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.9e-234 816.2 681 59.5
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.9e-234 816.2 698 58.7
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.4e-234 815.8 691 58.6
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 7.0e-234 814.3 685 58.7
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 7.0e-234 814.3 690 58.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.6e-233 813.1 688 58.0
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.0e-232 810.4 686 59.3
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.3e-232 810.1 688 57.8
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 2.3e-232 809.3 691 58.8
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 2.3e-232 809.3 689 58.6
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.1e-231 807.0 686 58.3
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 3.3e-231 805.4 682 59.1
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 5.6e-231 804.7 689 57.8
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 7.3e-231 804.3 691 58.0
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 2.8e-230 802.4 672 58.8
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 6.2e-230 801.2 689 57.8
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.0e-229 798.5 688 58.0
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 5.2e-229 798.1 721 57.4
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.8e-229 797.7 688 57.8
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-228 796.6 688 57.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-228 796.6 688 57.7
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.6e-228 795.8 686 58.7
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 2.6e-228 795.8 684 58.0
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.4e-228 795.0 699 56.4
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.2e-227 792.7 687 58.8
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 4.9e-227 791.6 686 58.5
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 6.4e-227 791.2 692 58.2
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.9e-226 789.6 717 55.0
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 2.4e-226 789.3 692 58.1
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.1e-223 780.4 692 57.5
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.8e-222 775.8 684 56.6
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.4e-221 773.5 684 56.6
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 8.9e-221 770.8 686 56.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 5.8e-220 768.1 654 58.3
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.3e-219 766.9 690 55.9
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.9e-219 765.8 679 56.3
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.1e-218 763.8 715 55.5
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.2e-217 760.4 685 56.8
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.3e-215 752.3 691 55.4
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.4e-205 719.5 718 52.9
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 9.3e-202 707.6 660 55.5
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 6.0e-201 704.9 586 60.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.7e-200 703.4 705 53.5
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.4e-197 693.7 658 54.4
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 6.4e-195 684.9 665 53.2
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 8.7e-192 674.5 541 60.4
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 6.2e-190 668.3 606 58.1
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.3e-187 660.6 684 50.9
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 6.1e-177 625.2 712 47.9
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 6.9e-173 611.7 712 47.3
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.7e-171 607.1 655 49.8
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 4.2e-170 602.4 485 61.6
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-167 594.3 670 49.0
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 3.4e-164 582.8 565 54.5
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 4.2e-162 575.9 692 45.2
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.8e-160 570.5 691 44.1
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 3.0e-160 569.7 458 59.0
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 6.7e-160 568.5 688 46.8
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 5.0e-155 552.4 632 44.6
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.9e-154 550.4 466 57.7
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.1e-149 533.1 459 59.7
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 8.0e-145 518.5 677 42.5
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.5e-143 514.2 516 51.4
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 3.1e-141 506.5 381 62.5
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.9e-139 500.0 689 39.6
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.7e-110 404.4 628 37.3
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.2e-87 328.6 308 56.5
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 4.0e-72 276.9 202 64.4
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 7.1e-69 266.2 190 65.3
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 5.7e-66 256.5 324 45.7
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 7.4e-66 256.1 264 57.6
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 7.7e-55 219.5 211 52.1
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 5.5e-45 186.8 164 56.7
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.6e-44 185.3 144 58.3
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.6e-44 185.3 521 29.0
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 3.6e-44 184.1 334 37.1
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 3.2e-37 161.0 215 43.7
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 2.2e-33 148.3 126 57.9
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 4.8e-33 147.1 105 67.6
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 4.8e-33 147.1 116 61.2
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.2e-31 142.5 94 72.3
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.5e-29 134.8 201 40.8
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 5.5e-29 133.7 187 43.3
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 6.1e-28 130.2 88 69.3
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 3.0e-27 127.9 96 60.4
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 6.8e-27 126.7 97 59.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.4e-24 118.2 82 68.3
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 3.8e-22 110.9 201 32.8
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.9e-21 108.6 155 42.6
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 6.1e-20 103.6 72 69.4
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 4.9e-17 94.0 102 54.9
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 3.8e-14 84.3 81 51.9
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 1.1e-13 82.8 81 50.6
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 1.5e-13 82.4 186 30.6
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 5.6e-13 80.5 240 31.7
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 1.6e-12 79.0 75 56.0
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 8.9e-11 73.2 48 66.7
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.7e-10 70.5 66 56.1
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 5.7e-10 70.5 186 28.5
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.3e-09 69.3 55 54.5
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.7e-09 67.8 132 35.6
Cfa025796 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.8e-08 65.5 329 24.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 7.0e-08 63.5 53 54.7
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.6e-07 62.4 46 65.2
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.7e-07 61.6 66 50.0
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 3.5e-07 61.2 505 22.6
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.0e-06 59.7 111 30.6
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 5.0e-06 57.4 150 28.7
unitig_749.g13782 Utricularia gibba HOM05D004484 ORTHO05D423904 5.0e-06 57.4 38 68.4


User provided reference genes

Program Settings