Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1345.1 684 100.0
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 0.0e+00 1235.7 680 92.1
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1233.0 680 92.4
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 0.0e+00 1231.9 684 92.3
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 0.0e+00 1231.9 680 92.5
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 0.0e+00 1196.4 658 92.2
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 0.0e+00 1196.4 671 90.3
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 0.0e+00 1149.0 681 84.1
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 0.0e+00 1147.1 684 83.8
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 0.0e+00 1131.7 684 82.6
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 0.0e+00 1125.2 667 84.3
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 2.6e-284 981.9 684 72.1
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.7e-257 892.1 631 75.3
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.8e-253 879.4 686 63.0
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 2.3e-253 879.0 683 63.0
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 5.2e-253 877.9 688 62.4
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 9.8e-252 873.6 689 62.3
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 3.2e-250 868.6 688 61.9
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 2.7e-249 865.5 690 61.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 3.3e-247 858.6 691 60.5
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.8e-246 855.5 674 62.3
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 8.0e-246 854.0 689 59.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.8e-245 852.8 690 61.2
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 4.0e-245 851.7 581 77.6
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 8.9e-245 850.5 688 60.5
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.2e-244 850.1 692 59.7
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-243 846.7 689 59.5
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-243 846.3 689 59.7
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.9e-243 845.5 689 59.7
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.7e-243 845.1 690 58.8
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 6.4e-243 844.3 689 60.2
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 6.4e-243 844.3 689 59.7
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 8.3e-243 844.0 688 60.9
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-242 843.2 689 59.5
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 2.4e-242 842.4 691 60.3
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.4e-242 842.4 689 59.2
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 3.2e-242 842.0 693 60.6
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 5.4e-242 841.3 711 59.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.6e-241 839.7 694 59.9
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.7e-240 836.3 692 59.8
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.7e-240 836.3 691 59.2
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.7e-240 836.3 673 61.1
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 3.9e-240 835.1 685 59.3
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 3.9e-240 835.1 691 58.8
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 5.0e-240 834.7 694 59.2
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 6.6e-240 834.3 689 58.8
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-239 833.6 687 59.5
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.5e-239 833.2 690 60.0
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 3.3e-239 832.0 747 55.8
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 5.6e-239 831.2 700 59.0
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.2e-238 830.1 690 58.8
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.1e-238 829.3 691 58.9
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.1e-238 829.3 689 59.2
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 4.7e-238 828.2 685 60.3
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.4e-237 826.6 690 58.4
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 3.1e-237 825.5 692 59.1
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 3.1e-237 825.5 671 59.9
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 5.2e-237 824.7 694 58.5
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 8.9e-237 823.9 683 59.6
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.2e-236 823.5 694 58.2
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 5.8e-236 821.2 685 60.3
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 5.8e-236 821.2 688 59.0
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 5.8e-236 821.2 699 58.4
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 7.5e-236 820.8 690 59.4
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 2.2e-235 819.3 685 58.5
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 4.9e-235 818.1 679 58.5
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.4e-234 816.6 692 58.7
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.9e-234 816.2 690 58.8
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 2.4e-234 815.8 690 58.0
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.1e-234 814.3 689 58.3
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.6e-233 813.1 722 57.8
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 2.1e-233 812.8 718 55.7
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-233 812.4 689 58.1
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-233 812.4 689 58.1
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-233 812.4 689 58.2
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 1.7e-232 809.7 686 58.3
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.3e-232 809.3 691 58.3
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.6e-230 803.1 690 58.3
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.7e-230 801.6 700 56.6
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.6e-228 795.8 688 58.3
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 2.2e-227 792.7 685 57.8
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 6.4e-227 791.2 678 56.9
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 2.1e-225 786.2 692 57.1
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.5e-225 785.4 685 56.5
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.3e-224 782.7 685 56.6
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 6.6e-224 781.2 655 59.1
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.9e-223 779.6 685 56.6
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.3e-223 778.9 690 56.5
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 4.3e-223 778.5 716 56.0
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 5.6e-223 778.1 685 56.5
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.6e-222 775.4 691 56.2
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.3e-208 730.3 661 56.3
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 5.1e-208 728.4 717 52.7
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.2e-204 717.2 706 54.4
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 3.8e-203 712.2 657 54.5
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.1e-202 710.7 585 59.8
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.2e-195 686.4 665 53.2
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.1e-194 684.1 553 60.6
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.9e-194 683.3 607 59.0
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 3.4e-188 662.5 686 50.6
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.1e-178 630.9 712 47.9
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 4.6e-177 625.5 711 47.8
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 3.3e-175 619.4 654 50.2
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.9e-171 606.3 671 49.2
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 6.5e-171 605.1 486 61.1
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 3.0e-168 596.3 564 55.0
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 7.4e-167 591.7 691 45.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 2.0e-164 583.6 697 44.8
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.2e-163 580.1 688 47.1
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 7.2e-162 575.1 632 45.4
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 6.7e-160 568.5 459 58.2
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.1e-153 545.4 459 59.5
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.4e-152 544.3 466 56.2
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 3.5e-148 529.6 678 42.6
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.4e-144 517.7 517 51.6
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.2e-143 514.6 689 40.1
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 2.0e-140 503.8 382 61.8
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.8e-112 411.0 629 37.2
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.1e-93 348.6 295 59.3
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 3.0e-75 287.3 202 64.9
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-70 271.9 190 65.8
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.8e-67 261.5 263 52.5
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 6.7e-67 259.6 369 47.7
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.0e-54 219.2 213 52.1
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.0e-47 194.9 144 61.1
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.9e-45 188.3 332 35.5
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 1.9e-45 188.3 165 57.0
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.3e-43 181.4 524 28.8
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.3e-41 175.6 215 46.5
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.2e-34 152.5 116 62.1
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 2.6e-34 151.4 105 69.5
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 7.5e-34 149.8 127 58.3
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.3e-30 139.0 94 68.1
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.3e-30 138.3 187 43.9
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.5e-29 135.6 201 41.8
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.6e-28 132.1 88 68.2
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 8.0e-28 129.8 96 60.4
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 8.0e-28 129.8 97 60.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.7e-25 120.9 82 68.3
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 5.9e-23 113.6 160 43.8
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 5.0e-22 110.5 201 32.8
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-20 105.9 72 69.4
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.6e-18 98.2 100 55.0
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 1.0e-14 86.3 73 57.5
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 5.0e-14 84.0 82 52.4
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 3.3e-13 81.3 186 30.6
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 4.3e-13 80.9 131 38.2
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.1e-12 78.6 182 31.9
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.1e-11 74.7 132 37.9
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 8.9e-11 73.2 48 66.7
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.6e-10 71.6 66 57.6
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.7e-09 68.9 186 28.5
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 6.4e-09 67.0 55 52.7
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 4.1e-08 64.3 53 56.6
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.2e-07 62.8 66 51.5
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.2e-07 62.8 46 65.2


User provided reference genes

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