Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09141 Brassica carinata HOM05D006329 ORTHO05D008357 3.7e-219 764.6 400 100.0
Thhalv10016747m.g Eutrema salsugineum HOM05D006329 ORTHO05D008357 1.9e-194 682.6 406 87.9
Sp4g21490 Schrenkiella parvula HOM05D006329 ORTHO05D008357 3.9e-192 674.9 409 89.2
BraA05t19681Z Brassica rapa HOM05D006329 ORTHO05D008357 2.5e-191 672.2 404 90.6
A05p07160 Brassica napus HOM05D006329 ORTHO05D008357 2.8e-190 668.7 404 90.3
AL4G36440 Arabidopsis lyrata HOM05D006329 ORTHO05D008357 6.2e-190 667.5 414 86.2
AT2G39140 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 1.9e-186 656.0 412 85.2
BolC4t22452H Brassica oleracea HOM05D006329 ORTHO05D008357 1.8e-184 649.4 402 87.8
Carub.0004s2119 Capsella rubella HOM05D006329 ORTHO05D008357 2.3e-184 649.0 411 84.2
CARHR133910 Cardamine hirsuta HOM05D006329 ORTHO05D008357 7.4e-183 644.0 413 83.3
BcaC02g12042 Brassica carinata HOM05D006329 ORTHO05D008357 3.1e-181 638.6 403 86.8
C04p08570 Brassica napus HOM05D006329 ORTHO05D008357 3.1e-181 638.6 403 86.8
THA.LOC104824234 Tarenaya hassleriana HOM05D006329 ORTHO05D008357 6.1e-169 597.8 401 78.6
Thecc.10G083200 Theobroma cacao HOM05D006329 ORTHO05D008357 6.7e-152 541.2 377 71.6
COL.COLO4_17136 Corchorus olitorius HOM05D006329 ORTHO05D008357 8.2e-150 534.3 414 66.9
Actinidia34805 Actinidia chinensis HOM05D006329 ORTHO05D008357 2.4e-149 532.7 402 69.2
Cc02_g10940 Coffea canephora HOM05D006329 ORTHO05D008357 3.1e-149 532.3 414 68.6
Gohir.A10G203300 Gossypium hirsutum HOM05D006329 ORTHO05D008357 3.1e-149 532.3 417 66.2
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 7.0e-149 531.2 384 70.1
Duzib114G0755 Durio zibethinus HOM05D006329 ORTHO05D008357 1.6e-148 530.0 422 64.2
Gohir.D10G211400 Gossypium hirsutum HOM05D006329 ORTHO05D008357 2.6e-148 529.3 417 65.7
Gorai.011G237100 Gossypium raimondii HOM05D006329 ORTHO05D008357 2.6e-148 529.3 417 65.7
Manes.05G201000 Manihot esculenta HOM05D006329 ORTHO05D008357 7.7e-148 527.7 423 68.1
Potri.008G035500 Populus trichocarpa HOM05D006329 ORTHO05D008357 1.0e-147 527.3 381 70.3
Ciclev10031516m.g Citrus clementina HOM05D006329 ORTHO05D008357 1.7e-147 526.6 406 70.7
Nitab4.5_0001450g0040 Nicotiana tabacum HOM05D006329 ORTHO05D008357 6.5e-147 524.6 409 65.8
Sabra08G0023700 Salix brachista HOM05D006329 ORTHO05D008357 3.2e-146 522.3 406 66.5
Nitab4.5_0001659g0150 Nicotiana tabacum HOM05D006329 ORTHO05D008357 5.5e-146 521.5 409 65.5
QL08p054507 Quercus lobata HOM05D006329 ORTHO05D008357 1.0e-144 517.3 405 65.2
QL08p054383 Quercus lobata HOM05D006329 ORTHO05D008357 4.4e-143 511.9 405 64.7
Solyc11g008360.3 Solanum lycopersicum HOM05D006329 ORTHO05D008357 2.2e-142 509.6 382 66.8
PGR142G3823 Punica granatum HOM05D006329 ORTHO05D008357 3.7e-142 508.8 410 63.9
MBI18_g02633_MAGBIO Magnolia biondii HOM05D006329 ORTHO05D008357 8.3e-142 507.7 375 67.7
MD07G1170000 Malus domestica HOM05D006329 ORTHO05D008357 1.1e-141 507.3 407 65.4
FAN10G3782 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.4e-141 506.9 381 67.7
PGSC0003DMG400007434 Solanum tuberosum HOM05D006329 ORTHO05D008357 1.4e-141 506.9 421 63.7
Sed0004104 Sechium edule HOM05D006329 ORTHO05D008357 1.2e-140 503.8 409 64.3
Hma1.2p1_2894F.1_g329960 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 1.6e-140 503.4 409 68.2
Nn6g35280 Nelumbo nucifera HOM05D006329 ORTHO05D008357 2.7e-140 502.7 409 68.0
RcHm_v2.0_Chr1g0362601 Rosa chinensis HOM05D006329 ORTHO05D008357 4.5e-140 501.9 405 65.2
MELO3C019822.2 Cucumis melo HOM05D006329 ORTHO05D008357 7.7e-140 501.1 334 73.4
Eucgr.G02867 Eucalyptus grandis HOM05D006329 ORTHO05D008357 1.3e-139 500.4 331 78.2
FvH4_7g18810 Fragaria vesca HOM05D006329 ORTHO05D008357 1.7e-139 500.0 405 64.7
CsaV3_6G036680 Cucumis sativus L. HOM05D006329 ORTHO05D008357 3.8e-139 498.8 334 73.1
CANSAT56G2601 Cannabis sativa HOM05D006329 ORTHO05D008357 1.1e-138 497.3 340 73.5
FAN10G0068 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.5e-138 496.9 401 65.3
FAN06G3910 Fragaria x ananassa HOM05D006329 ORTHO05D008357 3.2e-138 495.7 405 64.7
Aqoxy1G01144 Aquilegia oxysepala HOM05D006329 ORTHO05D008357 9.4e-138 494.2 390 64.9
TAR623G1379 Trochodendron aralioides HOM05D006329 ORTHO05D008357 1.4e-136 490.3 414 64.7
SalBow6G7241 Salvia bowleyana HOM05D006329 ORTHO05D008357 1.8e-136 490.0 408 62.3
arahy.Tifrunner.gnm1.ann1.KFTR8M Arachis hypogaea HOM05D006329 ORTHO05D008357 2.3e-136 489.6 416 62.0
MSTRG.389 Avicennia marina HOM05D006329 ORTHO05D008357 4.0e-136 488.8 401 64.6
Migut.F01702 Erythranthe guttata HOM05D006329 ORTHO05D008357 5.2e-136 488.4 407 62.2
CiPaw.01G268700 Carya illinoinensis HOM05D006329 ORTHO05D008357 8.8e-136 487.6 326 74.2
Prupe.2G208900 Prunus persica HOM05D006329 ORTHO05D008357 2.6e-135 486.1 410 63.4
Cpa.g.sc53.128 Carica papaya HOM05D006329 ORTHO05D008357 1.7e-134 483.4 380 67.1
Haze_16856 Corylus avellana HOM05D006329 ORTHO05D008357 2.8e-134 482.6 343 71.7
Glyma.10G207800 Glycine max HOM05D006329 ORTHO05D008357 9.2e-133 477.6 405 62.2
Phvul.007G098900 Phaseolus vulgaris HOM05D006329 ORTHO05D008357 1.1e-130 470.7 415 61.0
Rhsim09G0148200 Rhododendron simsii HOM05D000461 ORTHO05D001829 5.6e-130 468.4 416 64.9
Peaxi162Scf00145g01311 Petunia axillaris HOM05D006329 ORTHO05D008357 1.6e-129 466.8 376 64.6
CDE03G0204 Ceratophyllum demersum HOM05D006329 ORTHO05D008357 3.6e-129 465.7 369 65.6
Ca_10544_v3 Cicer arietinum L. HOM05D006329 ORTHO05D008357 3.6e-129 465.7 408 60.0
GSVIVG01016221001 Vitis vinifera HOM05D006329 ORTHO05D008357 3.6e-129 465.7 274 80.3
PSO339G5012 Papaver somniferum HOM05D006329 ORTHO05D008357 4.7e-129 465.3 377 62.9
ClCG08G007690 Citrullus lanatus HOM05D006329 ORTHO05D008357 6.1e-129 464.9 314 72.6
FAN06G0494 Fragaria x ananassa HOM05D006329 ORTHO05D008357 6.1e-129 464.9 410 61.2
PSO063G6532 Papaver somniferum HOM05D006329 ORTHO05D008357 1.4e-128 463.8 377 62.6
Psat6g180040 Pisum sativum HOM05D006329 ORTHO05D008357 4.0e-128 462.2 374 62.6
TPR.G10288 Trifolium pratense HOM05D006329 ORTHO05D008357 5.2e-128 461.8 407 60.0
Sopen11g004170 Solanum pennellii HOM05D006329 ORTHO05D008357 1.3e-126 457.2 302 73.5
arahy.Tifrunner.gnm1.ann1.21BGD2 Arachis hypogaea HOM05D006329 ORTHO05D008357 1.7e-126 456.8 406 59.6
Oeu013841.1 Olea europaea HOM05D006329 ORTHO05D008357 1.7e-126 456.8 356 68.8
Lj5g0015116 Lotus japonicus HOM05D006329 ORTHO05D008357 4.9e-126 455.3 339 71.7
Lalb_Chr21g0313671 Lupinus albus HOM05D006329 ORTHO05D008357 3.2e-125 452.6 345 68.4
Medtr1g094190 Medicago truncatula HOM05D006329 ORTHO05D008357 7.0e-125 451.4 404 59.4
EL10Ac6g14260 Beta vulgaris HOM05D006329 ORTHO05D008357 2.0e-124 449.9 310 69.7
Aa31LG5G20460 Aethionema arabicum HOM05D006329 ORTHO05D008357 4.6e-124 448.7 364 69.0
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 3.0e-123 446.0 311 69.8
Ah.02g128110 Amaranthus hybridus HOM05D006329 ORTHO05D008357 1.5e-122 443.7 350 63.4
HanXRQChr14g0456591 Helianthus annuus HOM05D006329 ORTHO05D008357 1.5e-122 443.7 271 78.6
Zm00001eb004240 Zea mays HOM05D006329 ORTHO05D008357 4.3e-122 442.2 379 62.3
Lsat_1_v5_gn_2_113040 Lactuca sativa HOM05D006329 ORTHO05D008357 5.6e-122 441.8 306 71.2
vmacro04842 Vaccinium macrocarpon HOM05D006329 ORTHO05D008357 9.5e-122 441.0 422 61.6
SGA_v2.0_scaffold51G18714 Striga asiatica HOM05D006329 ORTHO05D008357 3.6e-121 439.1 392 60.7
ATR0219G015 Amborella trichopoda HOM05D006329 ORTHO05D008357 6.2e-121 438.3 358 62.6
DCAR_005490 Daucus carota HOM05D006329 ORTHO05D008357 2.0e-119 433.3 378 60.8
CAN.G321.64 Capsicum annuum HOM05D006329 ORTHO05D008357 7.5e-119 431.4 264 78.8
Cfa001679 Carpinus fangiana HOM05D006329 ORTHO05D008357 4.1e-117 425.6 255 78.4
CSS0005771 Camellia sinensis var. sinensis HOM05D006329 ORTHO05D008357 5.4e-117 425.2 406 59.1
Hund20700 Selenicereus undatus HOM05D006329 ORTHO05D008357 2.3e-115 419.9 418 55.0
EL10Ac4g09587 Beta vulgaris HOM05D006329 ORTHO05D008357 5.6e-114 415.2 287 69.7
HPP92_026018 Vanilla planifolia HOM05D006329 ORTHO05D008357 5.6e-114 415.2 378 59.8
ECA238G1295 Erigeron canadensis HOM05D006329 ORTHO05D001676 1.8e-112 410.2 248 77.0
VMungo0251G3605 Vigna mungo HOM05D006329 ORTHO05D008357 5.8e-111 405.2 323 64.4
HPP92_027741 Vanilla planifolia HOM05D006329 ORTHO05D008357 2.7e-108 396.4 309 65.7
Dinv31231 Davidia involucrata HOM05D006329 ORTHO05D008357 4.6e-108 395.6 326 67.2
RhsimUnG0185600 Rhododendron simsii HOM05D000461 ORTHO05D001829 1.5e-106 390.6 380 62.4
Lj3A938T44 Lonicera japonica HOM05D006329 ORTHO05D008357 2.8e-105 386.3 389 56.3
Os03g0152700 Oryza sativa ssp. japonica HOM05D006329 ORTHO05D008357 1.7e-102 377.1 340 58.2
AUR62002759 Chenopodium quinoa HOM05D006329 ORTHO05D008357 5.4e-101 372.1 237 75.5
Lalb_Chr21g0313541 Lupinus albus HOM05D006329 ORTHO05D008357 4.9e-94 349.0 210 76.7
Mapoly0002s0007 Marchantia polymorpha HOM05D006329 ORTHO05D008357 2.3e-91 340.1 263 62.7
Pp3c7_13640 Physcomitrium patens HOM05D006329 ORTHO05D008357 2.6e-87 326.6 266 60.5
Cfa001678 Carpinus fangiana HOM05D006329 ORTHO05D008357 2.2e-86 323.6 222 74.8
SMO329G0071 Selaginella moellendorffii HOM05D006329 ORTHO05D008357 1.5e-82 310.8 252 59.9
Sc09g0006060 Simmondsia chinensis HOM05D006329 ORTHO05D008357 1.5e-74 284.3 257 58.8
FAN01G2166 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.0e-70 271.6 195 70.8
HPP92_026744 Vanilla planifolia HOM05D006329 ORTHO05D008357 2.4e-64 250.4 239 57.3
MCO14G528 Micromonas commoda HOM05D006329 ORTHO05D008357 1.6e-57 227.6 254 49.2
CBR_g29624 Chara braunii HOM05D006329 ORTHO05D008357 2.2e-54 217.2 162 64.2
Cre02.g095121 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 2.2e-46 190.7 318 38.7
PRCOL_00004574 Prasinoderma coloniale HOM05D006329 ORTHO05D008357 2.9e-46 190.3 253 44.7
AUR62014125 Chenopodium quinoa HOM05D006329 ORTHO05D008357 4.2e-45 186.4 116 75.9
CAN.G176.13 Capsicum annuum HOM05D006329 ORTHO05D033978 2.0e-31 141.0 83 79.5
Hma1.2p1_2894F.1_g329970 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 2.0e-31 141.0 82 80.5
AT3G43340 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 3.8e-30 136.7 74 90.5
Pp3s196_90 Physcomitrium patens HOM05D006329 ORTHO05D008357 1.6e-23 114.8 244 29.1
Hma1.2p1_2894F.1_g329973 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 2.1e-20 104.4 57 84.2
MCO04G216 Micromonas commoda HOM05D006329 ORTHO05D008357 3.5e-15 87.0 262 30.2
Cre07.g323550 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 6.6e-14 82.8 229 26.6
Glyma.20G182966 Glycine max HOM05D006329 ORTHO05D028485 1.1e-13 82.0 88 52.3
CAN.G184.4 Capsicum annuum HOM05D006329 ORTHO05D028485 2.8e-12 77.4 53 62.3
MCO01G641 Micromonas commoda HOM05D006329 ORTHO05D008357 5.7e-10 69.7 235 28.5
Lalb_Chr21g0313531 Lupinus albus HOM05D006329 ORTHO05D008357 5.4e-08 63.2 103 52.4
Potri.010G226901 Populus trichocarpa HOM05D006329 ORTHO05D028485 9.2e-08 62.4 51 62.7


User provided reference genes

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