Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 1.4e-260 902.5 474 100.0
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 8.5e-170 600.9 494 69.6
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 1.4e-167 593.6 480 70.2
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 3.0e-167 592.4 490 69.0
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.1e-166 590.5 453 72.6
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 3.7e-165 585.5 453 72.0
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 8.2e-165 584.3 475 68.8
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 8.2e-165 584.3 457 72.9
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 1.4e-164 583.6 469 71.6
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 9.1e-164 580.9 453 71.7
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 1.2e-163 580.5 466 70.2
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 4.2e-161 572.0 473 67.7
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 1.2e-160 570.5 477 69.0
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 6.1e-160 568.2 489 67.5
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 8.0e-160 567.8 457 72.0
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 8.0e-160 567.8 480 67.3
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.0e-159 567.4 453 70.2
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 1.7e-157 560.1 474 69.6
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 3.7e-157 558.9 491 66.2
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 3.5e-155 552.4 450 68.7
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.5e-155 552.0 459 66.0
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 5.9e-155 551.6 453 70.2
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 2.5e-153 546.2 481 64.9
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 5.5e-153 545.0 460 67.0
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 5.5e-153 545.0 488 64.1
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 7.2e-153 544.7 463 64.4
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 3.6e-152 542.3 461 66.4
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 8.0e-152 541.2 474 65.4
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 8.0e-152 541.2 473 65.8
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 8.8e-151 537.7 456 66.0
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 8.8e-151 537.7 454 66.5
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 2.6e-150 536.2 453 68.2
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.6e-150 536.2 461 67.5
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 3.4e-150 535.8 474 65.4
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 9.8e-150 534.3 451 68.5
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 3.7e-149 532.3 448 66.5
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 6.3e-149 531.6 479 63.9
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 3.1e-148 529.3 452 66.6
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 2.0e-147 526.6 480 64.2
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 2.7e-147 526.2 458 65.7
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 4.5e-147 525.4 454 67.8
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 7.7e-147 524.6 461 63.8
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.7e-146 523.5 456 64.3
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 2.9e-146 522.7 449 67.0
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 2.8e-144 516.2 452 65.7
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 3.0e-143 512.7 440 67.0
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 1.7e-141 506.9 472 59.5
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 1.7e-141 506.9 453 59.6
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 2.8e-141 506.1 454 60.1
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 3.7e-141 505.8 445 66.7
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 4.9e-141 505.4 444 61.3
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 8.3e-141 504.6 457 59.5
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 8.3e-141 504.6 454 60.8
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 8.3e-141 504.6 469 59.5
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.4e-140 503.8 458 65.3
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.4e-140 503.8 455 62.9
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 1.8e-140 503.4 455 62.6
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 1.6e-139 500.4 463 60.7
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 3.5e-139 499.2 462 60.8
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 7.8e-139 498.0 446 62.8
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 1.3e-138 497.3 449 59.0
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.7e-138 496.9 451 60.8
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 3.8e-138 495.7 444 59.5
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 1.6e-136 490.3 451 60.1
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 2.1e-136 490.0 461 60.1
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.4e-135 487.3 449 57.9
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 3.0e-135 486.1 461 59.2
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 5.2e-135 485.3 450 57.6
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 8.9e-135 484.6 468 60.3
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 1.5e-134 483.8 466 59.0
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 1.5e-134 483.8 473 60.0
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 2.6e-134 483.0 453 60.9
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 2.9e-133 479.6 446 58.1
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 8.3e-133 478.0 453 62.9
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 1.4e-132 477.2 518 56.0
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 2.4e-132 476.5 463 57.5
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 3.2e-132 476.1 482 60.6
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 1.6e-131 473.8 457 56.5
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 4.6e-131 472.2 461 55.7
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 2.1e-128 463.4 462 60.2
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 6.2e-128 461.8 621 49.1
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 1.4e-127 460.7 482 53.3
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 1.2e-126 457.6 434 62.2
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 2.9e-125 453.0 355 72.4
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.1e-124 451.1 397 65.5
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 7.3e-121 438.3 401 63.8
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 1.7e-117 427.2 348 66.7
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 1.6e-115 420.6 449 58.4
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 9.5e-113 411.4 455 52.3
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 6.2e-112 408.7 350 68.9
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 1.3e-106 391.0 371 64.2
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.2e-104 384.4 332 63.6
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 6.2e-104 382.1 414 54.3
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 3.1e-103 379.8 326 68.7
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 9.0e-103 378.3 403 59.3
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 2.7e-99 366.7 318 67.9
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 1.9e-84 317.4 298 65.1
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.9e-84 317.4 270 70.7
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.5e-81 307.8 402 45.8
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 3.7e-80 303.1 286 58.7
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 6.2e-80 302.4 410 47.8
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.5e-76 290.4 333 50.2
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.6e-67 260.0 433 40.6
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 5.5e-60 236.1 363 46.0
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 1.8e-55 221.1 291 46.4
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 2.4e-55 220.7 182 59.3
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 9.4e-52 208.8 353 43.3
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 1.1e-49 201.8 342 41.2
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 9.4e-44 182.2 149 65.8
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 2.0e-41 174.5 102 84.3
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 2.0e-41 174.5 98 84.7
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.0e-37 162.2 97 78.4
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.0e-37 162.2 162 63.0
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.9e-37 160.6 258 42.6
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 1.9e-36 157.9 186 59.1
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.2e-32 144.4 190 56.8
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 8.3e-24 115.9 100 59.0
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 3.5e-22 110.5 119 58.0
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 6.1e-19 99.8 361 28.3
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 8.0e-19 99.4 116 48.3
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 4.0e-18 97.1 143 47.6
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 7.5e-17 92.8 54 79.6
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 1.3e-16 92.0 49 83.7
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 4.1e-15 87.0 147 36.7
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 5.4e-15 86.7 128 48.4
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 7.8e-14 82.8 50 78.0
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 7.8e-14 82.8 50 78.0
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 4.3e-12 77.0 52 73.1
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.2e-11 75.5 83 44.6
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 1.1e-10 72.4 50 66.0
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 1.8e-10 71.6 56 60.7
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 1.7e-08 65.1 38 71.1
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 2.2e-08 64.7 38 78.9
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 2.9e-08 64.3 75 49.3
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 4.9e-08 63.5 41 78.0
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 6.4e-08 63.2 33 87.9
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.4e-07 62.0 83 44.6


User provided reference genes

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