Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1112 Acer truncatum HOM05D002594 ORTHO05D003499 5.1e-247 857.4 482 100.0
Atru.chr4.1090 Acer truncatum HOM05D002594 ORTHO05D003499 7.0e-212 740.7 457 92.6
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 3.2e-172 609.0 458 78.8
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 3.0e-162 575.9 472 73.5
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 2.9e-157 559.3 461 74.4
Dinv31273 Davidia involucrata HOM05D002594 ORTHO05D003499 6.4e-157 558.1 471 73.2
FAN12G4354 Fragaria x ananassa HOM05D002594 ORTHO05D003499 5.4e-156 555.1 458 74.5
FvH4_4g07440 Fragaria vesca HOM05D002594 ORTHO05D003499 2.1e-155 553.1 458 74.2
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 7.8e-155 551.2 461 73.8
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 2.3e-154 549.7 461 74.4
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 2.3e-154 549.7 459 73.4
Thecc.02G311700 Theobroma cacao HOM05D002594 ORTHO05D003499 3.9e-154 548.9 461 74.2
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 8.7e-154 547.7 460 73.7
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 4.3e-153 545.4 458 73.8
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 7.3e-153 544.7 461 73.3
Psat7g089360 Pisum sativum HOM05D002594 ORTHO05D003499 1.3e-152 543.9 459 72.3
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 2.1e-152 543.1 459 73.9
PGR044G2151 Punica granatum HOM05D002594 ORTHO05D003499 3.6e-152 542.3 463 72.6
CiPaw.05G038700 Carya illinoinensis HOM05D002594 ORTHO05D003499 3.1e-151 539.3 459 73.4
TPR.G12859 Trifolium pratense HOM05D002594 ORTHO05D003499 4.0e-151 538.9 459 71.7
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 5.3e-151 538.5 461 73.1
Potri.007G070700 Populus trichocarpa HOM05D002594 ORTHO05D003499 5.3e-151 538.5 459 73.6
RcHm_v2.0_Chr4g0399901 Rosa chinensis HOM05D002594 ORTHO05D003499 4.5e-150 535.4 460 73.0
Lalb_Chr06g0165601 Lupinus albus HOM05D002594 ORTHO05D003499 9.9e-150 534.3 459 69.5
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 1.4e-148 530.4 462 72.3
QL09p022988 Quercus lobata HOM05D002594 ORTHO05D003499 2.4e-148 529.6 460 74.3
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 4.2e-148 528.9 458 72.3
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 7.1e-148 528.1 460 71.5
Lj3g0008201 Lotus japonicus HOM05D002594 ORTHO05D003499 1.2e-147 527.3 460 69.6
Duzib248G1457 Durio zibethinus HOM05D002594 ORTHO05D003499 1.6e-147 526.9 461 73.8
Nn7g37178 Nelumbo nucifera HOM05D002594 ORTHO05D003499 2.7e-147 526.2 462 71.9
Lj5g0011873 Lotus japonicus HOM05D002594 ORTHO05D003499 3.5e-147 525.8 461 71.6
Lj5g0018790 Lotus japonicus HOM05D002594 ORTHO05D003499 3.5e-147 525.8 461 71.6
Nitab4.5_0002208g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 4.6e-147 525.4 462 70.6
Psat7g003760 Pisum sativum HOM05D002594 ORTHO05D003499 4.6e-147 525.4 459 71.0
Ca_23469_v3 Cicer arietinum L. HOM05D002594 ORTHO05D003499 2.3e-146 523.1 460 71.1
MELO3C008151.2 Cucumis melo HOM05D002594 ORTHO05D003499 3.9e-146 522.3 467 70.9
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 5.1e-146 521.9 459 70.8
Lalb_Chr02g0145451 Lupinus albus HOM05D002594 ORTHO05D003499 8.7e-146 521.2 481 68.4
Nitab4.5_0002162g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 8.7e-146 521.2 462 70.3
Actinidia05385 Actinidia chinensis HOM05D002594 ORTHO05D003499 2.5e-145 519.6 469 70.1
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.5e-145 519.6 458 71.8
Dinv05869 Davidia involucrata HOM05D002594 ORTHO05D003499 5.6e-145 518.5 462 71.9
Nitab4.5_0000688g0290 Nicotiana tabacum HOM05D002594 ORTHO05D003499 5.6e-145 518.5 461 73.3
Sabra05G0078300 Salix brachista HOM05D002594 ORTHO05D003499 5.6e-145 518.5 460 71.1
Migut.B01299 Erythranthe guttata HOM05D002594 ORTHO05D003499 1.3e-144 517.3 468 69.9
MBI03_g24017_MAGBIO Magnolia biondii HOM05D002594 ORTHO05D003499 1.3e-144 517.3 459 71.2
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 8.1e-144 514.6 463 69.5
Aqoxy7G03613 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 2.4e-143 513.1 467 70.9
CsaV3_2G033800 Cucumis sativus L. HOM05D002594 ORTHO05D003499 2.4e-143 513.1 467 69.6
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 4.0e-143 512.3 465 69.0
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 2.6e-142 509.6 467 69.2
Cfa010375 Carpinus fangiana HOM05D002594 ORTHO05D003499 4.5e-142 508.8 459 70.8
MSTRG.7590 Avicennia marina HOM05D002594 ORTHO05D003499 6.4e-141 505.0 464 69.0
Actinidia06681 Actinidia chinensis HOM05D002594 ORTHO05D003499 7.1e-140 501.5 469 70.1
PGSC0003DMG400007322 Solanum tuberosum HOM05D002594 ORTHO05D003499 4.6e-139 498.8 462 68.8
Sopen04g001740 Solanum pennellii HOM05D002594 ORTHO05D003499 7.9e-139 498.0 462 69.9
PGSC0003DMG400002827 Solanum tuberosum HOM05D002594 ORTHO05D003499 1.3e-138 497.3 462 70.1
Potri.005G094600 Populus trichocarpa HOM05D002594 ORTHO05D003499 1.8e-138 496.9 459 68.6
ClCG06G002870 Citrullus lanatus HOM05D002594 ORTHO05D003499 2.3e-138 496.5 467 68.5
Medtr8g106170 Medicago truncatula HOM05D002594 ORTHO05D003499 2.3e-138 496.5 458 69.2
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 3.0e-138 496.1 451 68.7
AUR62012173 Chenopodium quinoa HOM05D002594 ORTHO05D003499 3.9e-138 495.7 462 66.7
Sopen02g026590 Solanum pennellii HOM05D002594 ORTHO05D003499 3.9e-138 495.7 462 68.4
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 5.1e-138 495.4 464 68.1
Glyma.09G007700 Glycine max HOM05D002594 ORTHO05D003499 5.1e-138 495.4 462 67.3
Lalb_Chr02g0145431 Lupinus albus HOM05D002594 ORTHO05D003499 5.1e-138 495.4 481 65.7
Solyc02g081960.3 Solanum lycopersicum HOM05D002594 ORTHO05D003499 5.1e-138 495.4 462 68.4
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 6.7e-138 495.0 462 67.7
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 8.7e-138 494.6 459 68.4
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 1.5e-137 493.8 459 68.8
vmacro07278 Vaccinium macrocarpon HOM05D002594 ORTHO05D003499 1.9e-137 493.4 419 70.6
CSS0036069 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 2.5e-137 493.0 462 69.9
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 2.5e-137 493.0 459 67.8
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 2.5e-137 493.0 465 70.1
SalBow8G2582 Salvia bowleyana HOM05D002594 ORTHO05D003499 2.5e-137 493.0 462 68.6
Haze_03325 Corylus avellana HOM05D002594 ORTHO05D003499 4.3e-137 492.3 405 71.1
Solyc04g005690.4 Solanum lycopersicum HOM05D002594 ORTHO05D003499 4.3e-137 492.3 462 70.1
TAR371G1001 Trochodendron aralioides HOM05D002594 ORTHO05D003499 5.6e-137 491.9 462 70.1
VMungo0720G1145 Vigna mungo HOM05D002594 ORTHO05D003499 2.8e-136 489.6 459 68.0
EL10Ac2g04712 Beta vulgaris HOM05D002594 ORTHO05D003499 3.7e-136 489.2 472 65.5
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 6.2e-136 488.4 460 69.8
HPP92_018935 Vanilla planifolia HOM05D002594 ORTHO05D003499 2.4e-135 486.5 464 66.2
CARHR015140 Cardamine hirsuta HOM05D002594 ORTHO05D003499 2.0e-134 483.4 458 67.0
Carub.0001s1441 Capsella rubella HOM05D002594 ORTHO05D003499 4.5e-134 482.3 458 66.6
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 5.8e-134 481.9 465 66.0
ECA233G2844 Erigeron canadensis HOM05D002594 ORTHO05D003499 1.3e-133 480.7 460 67.0
Phvul.007G037600 Phaseolus vulgaris HOM05D002594 ORTHO05D003499 1.3e-133 480.7 459 68.0
C08p16810 Brassica napus HOM05D002594 ORTHO05D003499 1.7e-133 480.3 459 65.8
AUR62022810 Chenopodium quinoa HOM05D002594 ORTHO05D003499 1.7e-133 480.3 462 68.0
AUR62012853 Chenopodium quinoa HOM05D002594 ORTHO05D003499 2.9e-133 479.6 462 67.5
Rhsim03G0093900 Rhododendron simsii HOM05D002594 ORTHO05D003499 6.5e-133 478.4 475 65.1
Lj2g0011534 Lotus japonicus HOM05D002594 ORTHO05D003499 1.4e-132 477.2 470 65.3
BolC8t49302H Brassica oleracea HOM05D002594 ORTHO05D003499 1.9e-132 476.9 459 65.6
BcaB03g13089 Brassica carinata HOM05D002594 ORTHO05D003499 4.2e-132 475.7 459 66.0
Sed0006467 Sechium edule HOM05D002594 ORTHO05D003499 7.1e-132 474.9 467 66.2
MD16G1250800 Malus domestica HOM05D002594 ORTHO05D003499 1.6e-131 473.8 335 77.6
Aqoxy5G03555 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 2.7e-131 473.0 464 63.8
BcaC07g38750 Brassica carinata HOM05D002594 ORTHO05D003499 2.7e-131 473.0 459 65.6
CDE02G3426 Ceratophyllum demersum HOM05D002594 ORTHO05D003499 3.5e-131 472.6 332 75.9
BraA08t35110Z Brassica rapa HOM05D002594 ORTHO05D003499 1.3e-130 470.7 459 65.6
Ah.15g095630 Amaranthus hybridus HOM05D002594 ORTHO05D003499 2.3e-130 469.9 333 76.9
Peaxi162Scf00420g00339 Petunia axillaris HOM05D002594 ORTHO05D003499 1.5e-129 467.2 464 65.1
CSS0003265 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 5.7e-129 465.3 461 65.5
unitig_37.g12045 Utricularia gibba HOM05D002594 ORTHO05D003499 2.8e-128 463.0 461 65.9
Sc21g0005370 Simmondsia chinensis HOM05D002594 ORTHO05D003499 6.9e-127 458.4 461 67.0
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 9.0e-127 458.0 460 65.4
BraA06t24251Z Brassica rapa HOM05D002594 ORTHO05D003499 9.0e-127 458.0 460 65.4
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 2.6e-126 456.4 458 64.4
AT1G14640 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 2.6e-126 456.4 458 64.4
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.7e-125 453.8 458 64.0
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 2.9e-125 453.0 457 66.3
AT1G14650 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 3.8e-125 452.6 459 64.7
BolC5t30004H Brassica oleracea HOM05D002594 ORTHO05D003499 5.0e-125 452.2 460 65.4
HPP92_018926 Vanilla planifolia HOM05D002594 ORTHO05D003499 1.9e-124 450.3 321 76.0
BcaB02g06534 Brassica carinata HOM05D002594 ORTHO05D003499 2.5e-124 449.9 459 65.4
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 1.2e-123 447.6 467 65.5
Carub.0001s1440 Capsella rubella HOM05D002594 ORTHO05D003499 2.1e-123 446.8 458 59.8
ECA247G2788 Erigeron canadensis HOM05D002594 ORTHO05D003499 2.7e-123 446.4 457 63.5
C05p12600 Brassica napus HOM05D002594 ORTHO05D003499 4.6e-123 445.7 460 65.0
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 7.9e-123 444.9 457 64.3
Sp1g13010 Schrenkiella parvula HOM05D002594 ORTHO05D003499 1.0e-122 444.5 405 65.2
A08p31890 Brassica napus HOM05D002594 ORTHO05D003499 1.3e-120 437.6 362 69.3
HanXRQChr17g0538361 Helianthus annuus HOM05D002594 ORTHO05D003499 8.2e-120 434.9 466 64.6
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 2.4e-119 433.3 462 62.1
AL1G26610 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 3.4e-118 429.5 464 58.0
Prupe.3G079300 Prunus persica HOM05D002594 ORTHO05D003499 4.5e-118 429.1 458 62.9
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 1.1e-116 424.5 474 62.0
SEGI_11496 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 2.5e-116 423.3 473 62.6
Lsat_1_v5_gn_6_65541 Lactuca sativa HOM05D002594 ORTHO05D003499 3.0e-114 416.4 475 59.8
Actinidia27174 Actinidia chinensis HOM05D002594 ORTHO05D003499 2.4e-111 406.8 469 60.8
Thhalv10016290m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 2.0e-110 403.7 472 59.5
Zm00001eb128190 Zea mays HOM05D002594 ORTHO05D003499 5.5e-108 395.6 468 57.9
Zm00001eb333220 Zea mays HOM05D002594 ORTHO05D003499 2.1e-107 393.7 472 58.1
Pp3c23_15260 Physcomitrium patens HOM05D002594 ORTHO05D003499 4.1e-103 379.4 467 56.7
Os02g0245000 Oryza sativa ssp. japonica HOM05D002594 ORTHO05D003499 1.7e-101 374.0 479 56.8
AagrBONN_evm.TU.Sc2ySwM_362.2665 Anthoceros agrestis HOM05D002594 ORTHO05D003499 6.5e-101 372.1 468 56.8
RcHm_v2.0_Chr7g0192451 Rosa chinensis HOM05D002594 ORTHO05D003499 3.2e-100 369.8 462 51.9
Prupe.3G162200 Prunus persica HOM05D002594 ORTHO05D003499 3.0e-98 363.2 456 55.0
Mapoly0053s0080 Marchantia polymorpha HOM05D002594 ORTHO05D003499 5.2e-98 362.5 466 59.2
RcHm_v2.0_Chr7g0192471 Rosa chinensis HOM05D002594 ORTHO05D003499 1.3e-96 357.8 462 50.6
Pp3c18_11660 Physcomitrium patens HOM05D002594 ORTHO05D003499 4.8e-96 355.9 343 63.0
SMO116G0104 Selaginella moellendorffii HOM05D002594 ORTHO05D003499 2.1e-91 340.5 465 54.2
RcHm_v2.0_Chr7g0191091 Rosa chinensis HOM05D002594 ORTHO05D003499 2.1e-83 313.9 463 52.7
MD10G1329300 Malus domestica HOM05D002594 ORTHO05D003499 1.3e-77 294.7 345 55.1
Medtr7g063860 Medicago truncatula HOM05D002594 ORTHO05D003499 6.1e-75 285.8 383 54.8
AUR62002724 Chenopodium quinoa HOM05D002594 ORTHO05D003499 2.3e-74 283.9 363 49.9
FvH4_5g06370 Fragaria vesca HOM05D002594 ORTHO05D003499 3.1e-74 283.5 471 46.3
BcaNung05662 Brassica carinata HOM05D002594 ORTHO05D003499 2.6e-73 280.4 357 54.1
CBR_g33984 Chara braunii HOM05D002594 ORTHO05D003499 3.4e-73 280.0 468 44.2
FAN18G4310 Fragaria x ananassa HOM05D002594 ORTHO05D003499 7.5e-73 278.9 466 45.9
Nitab4.5_0002805g0060 Nicotiana tabacum HOM05D002594 ORTHO05D003499 5.4e-71 272.7 454 50.0
FAN08G0321 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.1e-67 260.8 470 42.8
Lalb_Chr02g0145421 Lupinus albus HOM05D002594 ORTHO05D003499 6.8e-66 255.8 174 79.3
BcaNung05664 Brassica carinata HOM05D002594 ORTHO05D003499 2.2e-64 250.8 192 73.4
TPR.G26451 Trifolium pratense HOM05D002594 ORTHO05D003499 3.2e-63 246.9 452 44.7
FAN04G1383 Fragaria x ananassa HOM05D002594 ORTHO05D003499 6.6e-61 239.2 461 44.3
MD05G1356100 Malus domestica HOM05D002594 ORTHO05D003499 5.6e-60 236.1 198 65.2
Cc09_g04890 Coffea canephora HOM05D002594 ORTHO05D003499 6.2e-59 232.6 292 56.8
Cc09_g04870 Coffea canephora HOM05D002594 ORTHO05D003499 5.1e-53 213.0 146 81.5
Oeu046918.1 Olea europaea HOM05D002594 ORTHO05D003499 8.6e-53 212.2 456 40.6
GSVIVG01012058001 Vitis vinifera HOM05D002594 ORTHO05D003499 4.9e-48 196.4 456 38.2
MCO06G134 Micromonas commoda HOM05D002594 ORTHO05D003499 6.4e-48 196.1 252 48.0
BcaC05g25380 Brassica carinata HOM05D002594 ORTHO05D003499 1.1e-44 185.3 231 53.7
Cc00_g29290 Coffea canephora HOM05D002594 ORTHO05D003499 8.1e-43 179.1 108 86.1
RcHm_v2.0_Chr1g0364591 Rosa chinensis HOM05D002594 ORTHO05D003499 5.3e-42 176.4 309 41.4
Cre06.g307450 Chlamydomonas reinhardtii HOM05D002594 ORTHO05D003499 4.4e-41 173.3 349 38.4
BcaC05g25379 Brassica carinata HOM05D002594 ORTHO05D003499 1.7e-40 171.4 144 67.4
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 8.7e-37 159.1 276 37.3
SMO364G0668 Selaginella moellendorffii HOM05D002594 ORTHO05D003499 3.6e-35 153.7 214 47.2
RcHm_v2.0_Chr1g0364581 Rosa chinensis HOM05D002594 ORTHO05D003499 1.0e-29 135.6 135 57.8
AUR62002723 Chenopodium quinoa HOM05D002594 ORTHO05D003499 1.5e-28 131.7 81 82.7
HanXRQChr11g0345831 Helianthus annuus HOM05D002594 ORTHO05D003499 3.2e-15 87.4 117 48.7
HanXRQChr03g0079451 Helianthus annuus HOM05D002594 ORTHO05D003499 5.1e-13 80.1 95 52.6
Cpa.g.sc1346.2 Carica papaya HOM05D002594 ORTHO05D003499 1.1e-12 79.0 120 55.0
Nitab4.5_0000646g0320 Nicotiana tabacum HOM05D002594 ORTHO05D003499 6.9e-10 69.7 324 31.8
DCAR_004347 Daucus carota HOM05D002594 ORTHO05D003499 2.6e-09 67.8 58 67.2
DCAR_009016 Daucus carota HOM05D002594 ORTHO05D003499 3.2e-07 60.8 116 44.8
BcaC05g25382 Brassica carinata HOM05D002594 ORTHO05D003499 7.2e-07 59.7 98 45.9
MBI03_g47333_MAGBIO Magnolia biondii HOM05D002594 ORTHO05D003499 7.2e-07 59.7 150 54.0
MD16G1250900 Malus domestica HOM05D002594 ORTHO05D003499 1.2e-06 58.9 99 53.5


User provided reference genes

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