Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.6e-278 962.2 526 100.0
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.0e-196 689.5 546 72.0
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.3e-195 686.8 544 72.6
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 2.9e-195 685.6 545 72.8
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.4e-194 683.3 540 72.6
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.2e-193 680.2 544 73.0
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.9e-192 675.2 544 70.6
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 4.2e-186 655.2 542 70.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.5e-186 654.8 539 71.2
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 3.0e-184 649.0 547 70.0
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.1e-183 647.1 544 68.8
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.0e-183 646.4 545 69.7
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.6e-183 646.0 549 69.9
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.3e-183 645.6 546 68.5
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 4.4e-183 645.2 543 69.1
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 7.4e-183 644.4 544 69.7
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.7e-182 643.3 549 69.0
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 6.3e-182 641.3 557 68.4
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 3.1e-181 639.0 544 69.3
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 4.5e-180 635.2 548 69.9
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.9e-179 632.5 546 67.9
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 2.5e-178 629.4 546 68.3
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.2e-177 627.1 547 68.2
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 2.7e-177 625.9 543 68.5
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 6.1e-177 624.8 546 68.7
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.8e-176 623.2 548 67.7
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 8.8e-176 620.9 552 65.2
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 5.7e-175 618.2 557 66.8
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.8e-174 615.1 534 68.5
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.8e-173 613.2 590 63.9
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.8e-173 613.2 590 63.9
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.8e-173 613.2 543 68.0
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 5.9e-172 608.2 557 67.1
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 5.0e-171 605.1 545 66.2
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 6.5e-171 604.7 551 66.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 9.4e-170 600.9 544 66.4
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 4.7e-169 598.6 557 64.6
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 2.3e-168 596.3 542 66.4
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 4.0e-168 595.5 546 66.1
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 5.2e-168 595.1 543 66.5
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.8e-168 594.3 536 65.5
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 2.6e-167 592.8 535 67.7
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 6.3e-166 588.2 544 64.0
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 6.3e-166 588.2 539 66.0
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.1e-165 585.9 556 65.1
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.9e-163 579.3 554 62.5
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.8e-163 578.9 556 65.1
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.1e-162 577.4 542 66.1
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 5.5e-162 575.1 546 63.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 9.4e-162 574.3 555 63.8
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 9.4e-162 574.3 548 64.2
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.7e-161 572.8 555 64.3
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 4.7e-161 572.0 559 63.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 8.0e-161 571.2 578 61.8
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.8e-160 570.1 497 68.0
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.8e-160 570.1 544 62.5
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 3.0e-160 569.3 532 65.6
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 5.2e-160 568.5 506 68.2
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 5.2e-160 568.5 572 62.1
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 8.8e-160 567.8 506 68.6
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.2e-159 567.4 551 64.4
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.5e-159 564.7 532 65.8
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.8e-158 562.8 549 63.4
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-157 560.1 560 62.9
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.0e-155 554.3 556 59.2
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 3.8e-155 552.4 488 68.6
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.2e-152 542.0 365 79.2
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 5.2e-152 542.0 545 61.8
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.5e-151 540.4 550 61.6
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.5e-151 540.4 544 62.3
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.7e-150 537.0 586 56.8
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.3e-150 534.6 550 58.2
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.2e-148 530.8 586 56.1
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 4.6e-148 528.9 542 60.3
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.3e-147 527.3 546 60.6
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.9e-147 526.2 547 60.7
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 3.9e-147 525.8 516 62.8
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 2.8e-145 519.6 561 57.4
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.3e-144 516.5 553 60.4
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 8.9e-144 514.6 569 59.1
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 2.0e-143 513.5 551 60.4
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 3.4e-143 512.7 516 62.8
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 3.7e-142 509.2 546 59.3
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 6.4e-142 508.4 559 55.6
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.2e-140 504.2 576 54.5
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.0e-139 501.1 524 62.0
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.1e-138 497.7 839 43.1
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 9.5e-138 494.6 561 56.5
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-137 494.2 579 54.4
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 2.1e-137 493.4 540 59.4
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.8e-137 493.0 552 58.2
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 3.6e-137 492.7 534 58.2
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.8e-136 490.3 539 56.8
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 3.1e-136 489.6 550 58.0
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 4.0e-136 489.2 514 61.5
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.5e-135 487.3 553 53.2
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 9.8e-135 484.6 552 57.4
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-134 484.2 554 57.2
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.3e-134 484.2 554 57.2
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 2.9e-134 483.0 552 57.2
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 2.9e-134 483.0 488 62.9
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.7e-134 482.6 528 57.8
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 8.3e-134 481.5 554 56.7
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.5e-130 469.9 551 57.5
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 7.3e-130 468.4 500 63.0
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 2.3e-128 463.4 466 64.8
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 4.0e-128 462.6 542 57.4
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 3.4e-127 459.5 549 56.1
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-126 457.6 582 52.4
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 4.9e-126 455.7 537 57.2
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.9e-126 455.7 550 56.9
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.9e-125 453.8 547 55.2
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 5.4e-125 452.2 548 56.6
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.2e-121 441.0 557 54.9
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.6e-121 440.7 561 54.9
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 3.1e-120 436.4 547 49.7
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.2e-119 434.5 410 69.0
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.0e-115 421.4 528 54.9
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.0e-115 421.4 528 54.9
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.5e-114 416.8 554 54.2
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.1e-113 413.7 559 50.1
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.8e-113 413.3 472 58.9
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 3.4e-111 406.4 556 50.5
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 9.9e-111 404.8 550 51.6
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.6e-108 396.0 330 65.5
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.7e-107 394.0 540 46.5
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.5e-103 380.9 361 69.5
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 9.9e-103 378.3 444 58.8
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.3e-98 363.2 546 46.5
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.6e-97 360.9 322 72.0
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.6e-97 360.9 536 47.2
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.8e-97 360.1 547 47.0
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-96 358.2 547 47.0
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-96 357.8 540 47.6
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.5e-95 354.4 423 54.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.8e-95 352.4 540 47.2
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.3e-94 351.3 536 46.8
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.7e-86 324.3 377 51.2
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.7e-86 324.3 527 47.1
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 7.7e-79 298.9 361 60.9
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 5.0e-78 296.2 200 69.5
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 2.5e-74 283.9 318 56.6
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 8.5e-70 268.9 346 53.8
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 9.4e-69 265.4 366 58.2
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.8e-65 253.8 246 69.5
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.2e-62 244.2 340 45.0
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.4e-58 229.9 504 38.9
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 4.0e-43 180.3 177 68.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 9.8e-42 175.6 181 60.2
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-36 158.3 247 42.1
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.0e-35 154.1 106 68.9
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 3.7e-33 147.1 226 47.8
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.5e-29 135.2 271 41.0
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 8.0e-28 129.4 103 80.6
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.6e-26 124.4 187 52.9
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.4e-25 119.8 319 31.0
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-23 115.5 221 43.0
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.3e-22 112.1 139 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.7e-22 111.7 238 39.9
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 3.4e-18 97.4 95 66.3
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.9e-17 93.6 226 37.2
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 8.3e-17 92.8 56 80.4
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-16 92.0 221 43.0
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 5.4e-16 90.1 51 76.5
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.1e-15 88.2 88 58.0
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.7e-14 85.1 54 64.8
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-12 78.2 66 65.2
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-12 78.2 66 65.2
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 2.8e-12 77.8 118 49.2
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.7e-12 77.0 94 53.2
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 8.9e-11 72.8 108 51.9
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.6e-10 71.2 63 61.9
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 5.8e-10 70.1 64 54.7
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.1e-07 61.6 122 29.5
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 2.7e-07 61.2 63 54.0
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 8.6e-06 56.2 97 43.3


User provided reference genes

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