Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 0.0e+00 1659.4 822 100.0
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 0.0e+00 1157.1 826 71.4
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 0.0e+00 1111.7 810 69.6
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 7.1e-289 997.3 663 73.3
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 3.0e-271 938.7 794 61.1
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 1.8e-252 876.3 801 56.3
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.2e-250 869.4 734 57.6
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 6.5e-250 867.8 742 57.1
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 6.5e-250 867.8 780 55.8
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 8.4e-250 867.5 766 56.7
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 1.4e-249 866.7 795 56.6
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 2.5e-249 865.9 793 56.1
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 6.0e-248 861.3 802 54.0
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 1.0e-247 860.5 813 54.9
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 8.7e-247 857.4 717 57.5
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 3.7e-245 852.0 711 57.1
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 1.1e-244 850.5 807 53.3
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 1.8e-244 849.7 702 58.4
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 5.3e-244 848.2 812 53.8
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 6.9e-244 847.8 821 52.1
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 3.4e-243 845.5 841 53.6
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.5e-243 845.1 717 56.8
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 4.5e-243 845.1 756 55.6
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.3e-242 843.6 711 56.7
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.9e-242 842.4 705 57.3
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 6.5e-242 841.3 781 54.3
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 2.5e-241 839.3 678 58.4
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 4.2e-241 838.6 798 53.1
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.8e-237 825.9 795 53.2
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 3.7e-237 825.5 723 56.6
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.1e-236 823.9 813 53.6
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 5.3e-236 821.6 723 55.0
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 5.3e-236 821.6 712 56.0
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.0e-234 817.4 781 51.5
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 1.7e-234 816.6 792 52.9
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 3.8e-234 815.5 745 54.6
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 5.0e-234 815.1 790 52.0
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 8.5e-234 814.3 667 57.1
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.4e-233 813.5 671 57.7
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 1.9e-233 813.1 700 56.1
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.9e-233 813.1 815 50.9
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.2e-233 812.4 735 54.0
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 4.2e-233 812.0 726 54.5
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.2e-232 810.4 684 57.5
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 2.1e-232 809.7 806 51.5
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 2.3e-231 806.2 684 57.5
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 5.1e-231 805.1 771 52.1
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 6.7e-231 804.7 684 57.2
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 2.0e-230 803.1 803 51.8
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 2.6e-230 802.7 728 55.6
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.7e-229 800.0 773 52.0
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 4.8e-229 798.5 691 56.0
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 3.4e-227 792.3 804 50.2
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.0e-226 790.8 685 55.0
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 1.0e-226 790.8 660 56.5
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.0e-226 790.8 719 55.2
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.3e-226 790.4 726 55.2
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.9e-226 789.3 713 54.4
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 5.0e-226 788.5 749 53.3
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 6.5e-226 788.1 786 49.7
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 1.1e-225 787.3 712 52.9
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 1.9e-225 786.6 792 50.6
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 3.2e-225 785.8 791 49.8
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 4.2e-225 785.4 743 52.2
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 3.0e-223 779.2 761 50.6
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 8.8e-223 777.7 792 49.6
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 2.6e-222 776.2 722 53.0
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 7.4e-222 774.6 767 50.8
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 9.7e-222 774.2 754 50.8
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 5.9e-219 765.0 762 50.0
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 5.9e-219 765.0 767 49.2
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.3e-218 763.8 783 49.0
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 3.8e-218 762.3 732 50.4
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 3.8e-218 762.3 742 49.5
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 5.0e-218 761.9 731 50.2
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 5.0e-218 761.9 735 51.6
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 8.5e-218 761.1 784 49.0
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 9.4e-217 757.7 725 51.0
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 3.0e-215 752.7 711 50.9
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 5.2e-215 751.9 768 49.0
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 5.2e-215 751.9 768 49.0
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 5.2e-215 751.9 768 49.0
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 3.3e-214 749.2 750 49.1
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 5.3e-212 741.9 628 55.1
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 1.5e-209 733.8 667 52.9
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 5.5e-209 731.9 619 57.5
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 6.1e-208 728.4 718 51.5
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 7.7e-203 711.4 775 48.1
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 1.3e-202 710.7 691 50.9
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 3.4e-198 696.0 675 48.4
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.8e-197 693.0 808 44.4
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 3.1e-196 689.5 565 57.7
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 4.1e-196 689.1 727 46.5
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 2.8e-192 676.4 686 48.5
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.1e-185 654.4 610 51.8
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.0e-179 632.1 539 56.0
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.8e-165 586.3 756 44.0
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 6.2e-160 568.9 675 43.9
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.7e-154 550.8 651 44.7
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 3.1e-151 540.0 480 58.5
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.9e-148 530.8 545 51.6
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 4.8e-136 489.6 769 36.9
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 3.9e-130 469.9 460 49.3
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 8.8e-114 415.6 507 44.2
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.7e-101 374.8 644 36.2
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.6e-94 351.7 304 56.9
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-90 338.2 483 40.0
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 4.1e-79 300.4 311 51.8
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.6e-78 298.5 361 46.8
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.7e-72 277.3 697 28.3
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 6.4e-72 276.6 299 50.5
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.4e-63 248.8 629 28.0
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 4.6e-62 243.8 658 25.7
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 2.1e-54 218.4 661 26.0
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.9e-47 195.3 686 24.2
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.7e-45 188.7 232 46.6
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.8e-34 152.1 190 45.8
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 4.0e-34 151.0 149 52.3
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.0e-29 134.8 660 21.4
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.4e-26 125.9 198 34.3
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 3.8e-16 91.3 66 59.1
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 6.5e-16 90.5 602 20.1
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 3.5e-14 84.7 651 19.5
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 7.9e-14 83.6 77 54.5
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 3.1e-10 71.6 50 64.0
Psat7g093040 Pisum sativum HOM05D000001 ORTHO05D000003 2.6e-09 68.6 305 23.6
TWI79G0516 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 4.5e-09 67.8 261 23.4
AagrBONN_evm.TU.Sc2ySwM_228.1578 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-09 67.4 225 23.1
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 1.0e-08 66.6 175 27.4
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 1.7e-08 65.9 51 58.8
Lalb_Chr07g0189111 Lupinus albus HOM05D000001 ORTHO05D000003 5.0e-08 64.3 261 24.9
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 5.0e-08 64.3 59 57.6
TPR.G30381 Trifolium pratense HOM05D000001 ORTHO05D000003 5.0e-08 64.3 294 22.8
AagrBONN_evm.TU.Sc2ySwM_117.2695 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.5e-07 62.0 235 24.3
Ca_18300_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 4.2e-07 61.2 292 22.9
Manes.01G180400 Manihot esculenta HOM05D000001 ORTHO05D000003 5.5e-07 60.8 241 24.1
Gohir.A08G009850 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.2e-06 59.7 259 22.4
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 59.3 398 19.8
SEGI_01155 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 1.6e-06 59.3 302 22.2
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 2.1e-06 58.9 349 22.1
Ca_25225_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.1e-06 58.9 397 21.7
THA.LOC104799057 Tarenaya hassleriana HOM05D000001 ORTHO05D010435 2.7e-06 58.5 313 23.3
Duzib150G1341 Durio zibethinus HOM05D000001 ORTHO05D000003 3.6e-06 58.2 359 22.0
MD02G1039900 Malus domestica HOM05D000001 ORTHO05D000003 3.6e-06 58.2 355 22.3
FvH4_2g16980 Fragaria vesca HOM05D000001 ORTHO05D000003 4.6e-06 57.8 308 22.4
FAN24G2985 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.6e-06 57.8 308 22.4
Aa31LG6G1130 Aethionema arabicum HOM05D000001 ORTHO05D000003 6.1e-06 57.4 263 23.2
ECA236G2823 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.1e-06 57.4 362 20.7


User provided reference genes

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