Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 8.2e-154 547.0 266 100.0
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 5.4e-89 331.6 239 70.3
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 2.5e-86 322.8 227 72.2
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 7.3e-86 321.2 238 70.2
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 9.5e-86 320.9 218 74.3
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.6e-85 320.1 224 72.3
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 2.1e-85 319.7 225 72.0
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 2.1e-85 319.7 229 71.6
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 2.8e-85 319.3 227 70.5
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 2.8e-85 319.3 227 71.4
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 2.8e-85 319.3 235 69.4
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.6e-85 318.9 227 70.9
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 4.7e-85 318.5 227 70.5
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 6.2e-85 318.2 221 73.3
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 6.2e-85 318.2 218 74.3
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 6.2e-85 318.2 218 74.3
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.1e-84 317.4 223 73.1
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.1e-84 317.4 223 71.3
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 1.4e-84 317.0 235 69.8
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.8e-84 316.6 221 72.9
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.8e-84 316.6 252 65.9
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 1.8e-84 316.6 270 63.7
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.8e-84 316.6 219 72.6
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.3e-84 316.2 227 70.5
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 3.1e-84 315.8 226 73.5
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 4.0e-84 315.5 214 74.8
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 5.2e-84 315.1 220 72.3
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 6.8e-84 314.7 221 72.4
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 8.9e-84 314.3 221 71.0
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 8.9e-84 314.3 221 71.9
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 8.9e-84 314.3 227 69.2
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 8.9e-84 314.3 223 70.0
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 1.2e-83 313.9 223 71.3
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 1.5e-83 313.5 223 70.4
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 2.0e-83 313.2 253 66.0
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 2.0e-83 313.2 223 70.9
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 2.6e-83 312.8 233 68.7
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.6e-83 312.8 224 71.9
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 4.4e-83 312.0 223 70.4
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 4.4e-83 312.0 220 70.9
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 5.8e-83 311.6 224 70.1
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 7.5e-83 311.2 221 71.5
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 1.3e-82 310.5 220 71.4
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.3e-82 310.5 223 69.1
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.3e-82 310.5 216 73.1
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 1.3e-82 310.5 218 72.5
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 1.7e-82 310.1 224 69.2
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.7e-82 310.1 219 72.1
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.2e-82 309.7 218 70.6
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 2.9e-82 309.3 223 70.4
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 3.7e-82 308.9 223 70.9
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 4.9e-82 308.5 234 67.1
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 4.9e-82 308.5 209 76.1
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 4.9e-82 308.5 216 71.3
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 4.9e-82 308.5 223 70.0
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 4.9e-82 308.5 223 70.0
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 4.9e-82 308.5 218 71.1
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 6.4e-82 308.1 224 70.1
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 8.3e-82 307.8 221 71.0
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.1e-81 307.4 223 69.5
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 1.1e-81 307.4 224 71.9
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.9e-81 306.6 226 69.0
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.9e-81 306.6 225 69.8
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 3.2e-81 305.8 233 67.0
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 7.1e-81 304.7 217 71.0
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 2.1e-80 303.1 229 69.4
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.1e-80 303.1 224 69.2
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 2.7e-80 302.8 223 68.6
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.7e-80 302.8 220 69.1
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 4.6e-80 302.0 224 67.4
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 6.0e-80 301.6 223 69.1
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 6.0e-80 301.6 223 69.5
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.3e-79 300.4 209 73.7
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 5.1e-79 298.5 213 70.0
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 5.1e-79 298.5 223 68.6
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 5.6e-78 295.0 223 66.4
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 9.5e-78 294.3 220 69.1
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 2.1e-77 293.1 219 67.6
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.1e-76 290.8 228 65.8
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.4e-76 290.4 246 65.0
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 1.8e-76 290.0 220 67.3
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 5.2e-76 288.5 230 63.9
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 8.9e-76 287.7 221 67.0
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 8.9e-76 287.7 221 67.0
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.5e-75 287.0 268 57.1
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 2.6e-75 286.2 201 72.1
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 3.4e-75 285.8 223 67.3
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 4.4e-75 285.4 221 66.1
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 3.8e-74 282.3 223 66.8
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 3.2e-73 279.3 257 59.1
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 7.1e-73 278.1 220 67.3
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.6e-72 276.9 194 72.7
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 3.0e-71 272.7 221 61.5
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 3.9e-71 272.3 197 70.1
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 5.6e-70 268.5 200 69.5
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 7.3e-70 268.1 202 66.8
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 8.1e-69 264.6 221 60.2
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 3.1e-68 262.7 221 58.8
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 1.5e-67 260.4 187 72.2
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.3e-66 257.3 203 68.0
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.6e-64 250.4 189 68.8
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 2.7e-64 249.6 206 61.7
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 6.0e-64 248.4 220 62.7
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 1.3e-63 247.3 211 61.1
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 1.5e-62 243.8 209 58.4
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 4.0e-60 235.7 205 63.4
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.5e-59 233.8 181 64.6
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 9.9e-59 231.1 182 65.4
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 4.2e-57 225.7 158 72.2
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 4.6e-56 222.2 203 59.1
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.5e-54 216.5 168 69.6
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 5.6e-54 215.3 231 51.1
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.8e-53 213.0 219 53.9
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 3.4e-51 206.1 222 51.4
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 3.4e-51 206.1 259 49.0
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 3.9e-47 192.6 162 61.7
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 3.9e-39 166.0 91 83.5
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.3e-34 151.0 113 66.4
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 1.2e-32 144.4 187 51.3
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.1e-32 143.7 75 92.0
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.2e-26 123.6 113 58.4
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 5.1e-23 112.5 72 73.6
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.5e-18 95.5 54 79.6
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 1.1e-17 94.7 61 67.2
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 4.7e-16 89.4 66 62.1
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.4e-15 87.8 58 70.7
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 2.0e-14 84.0 41 95.1
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.6e-14 83.6 48 85.4
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 7.7e-11 72.0 36 88.9
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 1.3e-10 71.2 75 52.0
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 9.4e-09 65.1 44 70.5


User provided reference genes

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