Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 0.0e+00 1158.3 580 100.0
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 0.0e+00 1105.5 554 99.8
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 0.0e+00 1099.0 554 99.1
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 0.0e+00 1086.6 554 98.4
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 0.0e+00 1080.1 551 98.5
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 6.3e-308 1060.1 551 97.3
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.0e-294 1016.1 523 97.9
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 8.2e-292 1006.5 554 93.3
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.1e-285 986.1 554 92.1
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-191 672.2 339 98.2
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 1.4e-169 600.5 598 53.0
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.3e-167 594.0 570 53.2
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 4.8e-167 592.0 578 52.8
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 4.8e-167 592.0 570 52.8
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 4.1e-166 589.0 568 53.0
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 4.1e-166 589.0 576 52.1
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 4.5e-165 585.5 570 53.2
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 1.0e-164 584.3 576 51.9
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.0e-164 584.3 569 52.7
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 1.0e-164 584.3 572 53.1
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 2.2e-164 583.2 569 52.4
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 2.9e-164 582.8 574 51.6
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 2.9e-164 582.8 574 52.1
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 6.5e-164 581.6 595 51.8
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 6.5e-164 581.6 572 53.0
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.1e-163 580.9 570 53.0
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.9e-163 580.1 574 52.1
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.2e-163 579.3 576 51.6
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 3.2e-163 579.3 566 53.2
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 5.5e-163 578.6 578 51.9
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 5.5e-163 578.6 593 51.4
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.2e-162 577.4 574 51.6
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 1.6e-162 577.0 571 52.5
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 1.6e-162 577.0 575 52.5
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 2.1e-162 576.6 572 51.0
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 2.7e-162 576.2 578 51.9
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 3.6e-162 575.9 568 52.3
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 6.1e-162 575.1 578 51.7
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 6.1e-162 575.1 578 51.7
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 6.1e-162 575.1 578 51.7
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 6.1e-162 575.1 574 51.4
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 6.1e-162 575.1 574 51.4
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 8.0e-162 574.7 586 51.5
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 1.0e-161 574.3 575 51.8
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 1.8e-161 573.5 575 51.1
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 2.3e-161 573.2 571 51.7
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 4.0e-161 572.4 571 51.7
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 6.8e-161 571.6 574 51.2
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 8.8e-161 571.2 574 50.7
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 1.2e-160 570.9 597 51.6
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 1.5e-160 570.5 574 51.7
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 2.0e-160 570.1 578 51.0
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 2.0e-160 570.1 565 51.0
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 2.6e-160 569.7 572 50.9
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 3.4e-160 569.3 578 51.6
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 5.7e-160 568.5 576 50.9
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 7.5e-160 568.2 571 51.7
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 9.7e-160 567.8 597 51.4
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 9.7e-160 567.8 577 51.0
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 1.3e-159 567.4 576 51.2
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.3e-159 567.4 569 51.1
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 1.7e-159 567.0 574 51.2
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 4.8e-159 565.5 571 51.1
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 1.4e-158 563.9 569 51.5
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 1.4e-158 563.9 593 49.6
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.4e-158 563.9 571 50.4
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 2.4e-158 563.1 573 51.3
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 3.1e-158 562.8 579 50.8
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 3.1e-158 562.8 579 50.8
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 4.1e-158 562.4 571 51.3
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 4.1e-158 562.4 589 51.6
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 9.1e-158 561.2 579 50.4
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 9.1e-158 561.2 573 50.1
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 9.1e-158 561.2 576 50.3
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 1.6e-157 560.5 571 50.4
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 2.7e-157 559.7 572 51.2
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 3.5e-157 559.3 563 52.0
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.0e-156 557.8 578 50.5
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 1.0e-156 557.8 575 50.6
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 1.0e-156 557.8 575 51.3
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.2e-156 556.6 575 51.1
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 3.8e-156 555.8 573 50.1
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 3.8e-156 555.8 582 50.7
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 5.0e-156 555.4 572 50.0
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 8.5e-156 554.7 565 51.2
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.9e-155 553.5 573 49.9
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 4.2e-155 552.4 578 50.5
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-154 550.8 571 49.9
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 1.2e-154 550.8 569 49.2
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 2.1e-154 550.1 578 48.6
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 2.1e-154 550.1 573 49.9
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 4.7e-154 548.9 576 50.5
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.8e-153 547.0 574 49.5
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.8e-153 547.0 603 49.3
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.5e-152 543.9 595 48.2
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.8e-151 539.7 578 49.5
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.7e-151 539.3 571 50.3
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 6.3e-151 538.5 611 47.1
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-150 537.7 571 48.9
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 2.4e-150 536.6 578 50.2
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 9.1e-150 534.6 571 50.4
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-149 534.3 560 48.6
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 7.7e-149 531.6 585 48.4
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.5e-147 527.3 619 47.0
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 4.2e-147 525.8 597 48.4
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 7.5e-144 515.0 562 49.8
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.2e-143 513.5 573 48.9
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 6.3e-143 511.9 565 48.5
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 8.3e-143 511.5 602 46.2
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 1.3e-140 504.2 577 48.5
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 3.6e-138 496.1 632 43.8
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 6.1e-138 495.4 556 47.5
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.4e-134 483.4 552 47.1
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 7.0e-134 481.9 571 46.1
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 3.9e-132 476.1 574 46.0
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.1e-130 470.3 561 45.3
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 3.2e-126 456.4 471 50.3
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.2e-125 454.5 787 36.7
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.3e-124 450.3 472 49.2
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 2.3e-124 450.3 544 45.8
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 4.3e-123 446.0 582 42.6
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.2e-122 444.5 542 45.6
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.2e-122 444.5 542 45.6
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 4.4e-120 436.0 511 46.2
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 9.2e-118 428.3 483 47.4
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 3.0e-116 423.3 596 41.6
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.3e-108 397.9 450 47.8
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 5.6e-107 392.5 578 41.5
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.7e-103 380.9 195 99.5
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 1.9e-94 350.9 288 59.7
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 4.2e-94 349.7 421 44.7
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 2.4e-89 334.0 294 56.5
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 3.2e-86 323.6 286 54.9
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.7e-85 320.5 729 32.5
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 1.4e-78 298.1 340 46.5
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 2.1e-77 294.3 348 46.3
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 5.7e-75 286.2 349 47.9
Actinidia00021 Actinidia chinensis HOM05D003203 ORTHO05D003526 9.4e-70 268.9 250 53.2
SpUn0831_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 5.7e-67 259.6 227 56.8
SHI27629 Sapria himalayana HOM05D003203 ORTHO05D003526 7.9e-61 239.2 235 53.2
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 8.2e-58 229.2 341 41.9
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 4.7e-53 213.4 255 46.3
HPP92_010182 Vanilla planifolia HOM05D003203 ORTHO05D003526 1.7e-50 204.9 193 55.4
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 2.2e-47 194.5 270 38.9
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 6.5e-47 193.0 194 50.5
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.5e-46 191.8 219 46.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.0e-43 181.4 307 37.1
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 1.3e-42 178.7 127 64.6
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 9.2e-33 146.0 188 45.2
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 5.9e-32 143.3 97 66.0
TPR.G38674 Trifolium pratense HOM05D003203 ORTHO05D003526 5.4e-25 120.2 92 60.9
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 7.0e-25 119.8 98 56.1
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.3e-22 110.9 72 66.7
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-21 108.6 179 35.2
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 2.8e-21 107.8 120 48.3
RcHm_v2.0_Chr1g0326771 Rosa chinensis HOM05D003203 ORTHO05D003526 1.8e-20 105.1 131 45.0
vmacro14465 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 8.9e-20 102.8 133 45.1
Gohir.A03G109301 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.8e-13 81.3 59 62.7
Gohir.A08G106700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.8e-12 78.6 59 64.4
QL11p006896 Quercus lobata HOM05D003203 ORTHO05D003526 9.8e-11 72.8 74 48.6
QL11p006907 Quercus lobata HOM05D003203 ORTHO05D003526 2.2e-10 71.6 73 47.9
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 2.9e-10 71.2 78 44.9
vmacro14464 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.3e-07 62.4 70 47.1
TPR.G38645 Trifolium pratense HOM05D003203 ORTHO05D003526 8.6e-07 59.7 74 37.8
RcHm_v2.0_Chr3g0490601 Rosa chinensis HOM05D003203 ORTHO05D003526 1.5e-06 58.9 41 58.5
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.9e-06 58.5 36 69.4
COL.COLO4_02731 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.3e-06 57.4 35 60.0


User provided reference genes

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