Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 8.5e-217 758.1 973 100.0
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 3.6e-98 364.0 336 57.7
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 4.4e-96 357.1 334 58.1
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 3.5e-93 347.4 314 59.6
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 7.2e-91 339.7 311 60.5
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 2.6e-88 331.3 319 56.4
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 2.4e-86 324.7 315 54.9
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.2e-85 322.4 312 58.3
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.0e-84 319.3 322 55.0
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 2.3e-84 318.2 306 57.8
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 2.9e-84 317.8 320 54.7
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 3.8e-84 317.4 296 58.1
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 4.3e-83 313.9 336 53.6
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 9.5e-83 312.8 310 56.1
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.2e-82 312.4 257 61.9
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 8.0e-82 309.7 315 53.7
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.4e-81 308.9 257 61.1
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 2.3e-81 308.1 317 52.7
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.0e-81 307.4 320 53.8
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 3.4e-80 304.3 358 50.6
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 4.4e-80 303.9 196 73.5
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 4.4e-80 303.9 292 56.2
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 4.4e-80 303.9 261 62.1
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.3e-79 302.4 266 60.5
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.3e-79 302.4 264 59.8
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 1.7e-79 302.0 261 61.7
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 2.2e-79 301.6 317 55.5
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.2e-79 301.6 259 61.0
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.2e-79 301.6 259 61.0
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.9e-78 298.5 341 50.7
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 2.4e-78 298.1 312 54.2
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 3.2e-78 297.7 311 55.0
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 4.1e-78 297.4 301 55.8
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 7.0e-78 296.6 304 53.0
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 2.0e-77 295.0 329 51.4
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 3.5e-77 294.3 238 63.9
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 4.6e-77 293.9 325 49.8
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 4.6e-77 293.9 303 55.4
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 7.8e-77 293.1 298 51.3
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.0e-76 292.7 265 59.2
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.0e-76 292.7 246 57.7
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 5.0e-76 290.4 275 57.8
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.1e-75 289.3 264 58.0
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 1.5e-75 288.9 291 53.3
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 2.5e-75 288.1 252 62.3
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 1.2e-74 285.8 257 58.8
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 2.1e-74 285.0 310 51.0
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 2.8e-74 284.6 330 53.0
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 6.2e-74 283.5 244 59.8
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 1.1e-73 282.7 262 56.5
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 1.1e-73 282.7 316 53.5
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.1e-73 282.7 310 50.6
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.1e-73 282.7 241 60.2
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 1.4e-73 282.3 295 52.9
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.3e-73 281.6 313 50.5
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 2.3e-73 281.6 352 49.1
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.1e-73 281.2 257 57.6
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 4.0e-73 280.8 347 48.7
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 4.0e-73 280.8 263 55.1
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 5.2e-73 280.4 305 54.1
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 6.8e-73 280.0 327 50.5
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 6.8e-73 280.0 311 49.8
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 1.5e-72 278.9 343 47.8
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 2.6e-72 278.1 343 47.2
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 8.3e-71 273.1 271 56.5
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 8.3e-71 273.1 305 49.8
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 1.1e-70 272.7 363 47.4
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 1.4e-70 272.3 256 55.5
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 4.1e-70 270.8 301 52.2
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 7.0e-70 270.0 301 52.2
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 9.2e-70 269.6 307 49.8
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.1e-69 268.5 294 51.7
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 6.0e-69 266.9 307 50.8
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 6.0e-69 266.9 266 54.5
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 6.0e-69 266.9 319 49.2
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 1.0e-68 266.2 295 51.9
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.7e-68 265.4 254 55.5
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 1.7e-68 265.4 246 54.9
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.5e-67 262.3 239 55.2
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 4.3e-67 260.8 354 49.2
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 3.6e-66 257.7 276 51.4
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.5e-64 252.3 258 54.7
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 1.3e-63 249.2 279 50.2
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.2e-63 248.4 165 69.7
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 3.7e-63 247.7 241 56.0
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 1.1e-62 246.1 275 49.5
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 1.1e-62 246.1 256 53.5
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 3.2e-62 244.6 297 47.8
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 4.1e-62 244.2 196 61.7
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 7.1e-62 243.4 302 48.3
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 9.2e-62 243.0 256 53.5
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 1.2e-61 242.7 292 49.7
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 1.2e-61 242.7 286 49.3
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 2.8e-58 231.5 182 61.0
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 5.8e-56 223.8 144 73.6
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 6.4e-55 220.3 143 72.7
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 1.4e-54 219.2 151 68.2
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 1.9e-54 218.8 214 51.4
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.2e-54 218.0 363 41.3
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 5.4e-54 217.2 265 49.8
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 2.9e-47 194.9 209 46.4
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 3.2e-46 191.4 258 40.3
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 2.1e-45 188.7 126 73.8
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 7.8e-45 186.8 126 69.8
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 2.5e-43 181.8 207 47.8
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.1e-37 162.2 182 44.5
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 7.9e-37 160.2 182 44.5
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 9.6e-35 153.3 186 39.8
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 3.1e-33 148.3 193 42.5
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 3.4e-32 144.8 205 42.4
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 7.6e-32 143.7 81 80.2
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 7.6e-32 143.7 82 76.8
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 7.1e-30 137.1 81 77.8
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.6e-29 136.0 80 77.5
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 2.8e-26 125.2 118 58.5
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.2e-26 124.0 72 77.8
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 1.8e-25 122.5 72 76.4
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 2.4e-25 122.1 75 72.0
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 3.1e-25 121.7 89 62.9
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 5.3e-25 120.9 73 74.0
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 6.9e-25 120.6 74 73.0
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 9.0e-25 120.2 81 70.4
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.5e-24 119.4 74 73.0
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 2.6e-24 118.6 75 70.7
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 7.6e-24 117.1 72 70.8
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.2e-22 111.7 70 71.4
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.2e-22 111.3 89 58.4
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.1e-21 109.0 72 68.1
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 2.6e-16 92.0 68 64.7
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 5.0e-15 87.8 56 69.6
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 7.2e-14 84.0 147 33.3
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.8e-12 79.3 42 81.0
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.3e-10 73.2 43 76.7
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 4.8e-10 71.2 44 70.5
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 1.1e-09 70.1 46 67.4
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.3e-07 63.2 45 66.7
Sopen01g002930 Solanum pennellii HOM05D000142 ORTHO05D007638 3.8e-07 61.6 122 33.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 1.4e-06 59.7 43 65.1
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 1.4e-06 59.7 43 65.1
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 3.2e-06 58.5 103 35.0
Solyc01g006940.4 Solanum lycopersicum HOM05D000142 ORTHO05D007638 4.2e-06 58.2 120 31.7
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 9.4e-06 57.0 152 28.3


User provided reference genes

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