Gene: Sopen01g002930

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g002930
  • Transcript Identifier Sopen01g002930.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 1784963-1787595 : positive

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g002930.1

Descriptions

  • Description 33 kDa ribonucleoprotein, chloroplast precursor - Nicotiana sylvestris (Wood tobacco), chloroplast RNA-binding protein | chloroplast RNA-binding protein 33 (CP33) | FUNCTIONS IN: RNA binding | LOCATED IN: thylakoid, chloroplast stroma, chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1901259
ISO
PLAZA Integrative Orthologychloroplast rRNA processing AT3G52380
GO:0031425
ISO
PLAZA Integrative Orthologychloroplast RNA processing AT3G52380

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT3G52380
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G52380

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G52380
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G52380
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT3G52380

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR003954 RNA recognition motif domain, eukaryote
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.11.2.3 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP33a)