Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 1.7e-207 725.7 355 100.0
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 6.5e-114 414.8 355 60.3
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 1.4e-113 413.7 364 57.7
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 2.5e-113 412.9 364 58.8
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 5.5e-113 411.8 337 62.3
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 9.3e-113 411.0 337 62.0
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 9.3e-113 411.0 347 60.8
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 9.3e-113 411.0 349 59.0
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.2e-112 410.6 348 59.5
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 1.6e-112 410.2 346 60.7
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 3.5e-112 409.1 345 59.7
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 4.6e-112 408.7 332 62.0
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 6.1e-112 408.3 350 59.1
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.0e-111 407.5 360 58.6
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 2.3e-111 406.4 326 64.1
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 3.0e-111 406.0 339 61.1
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 3.9e-111 405.6 355 58.6
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 8.7e-111 404.4 351 58.4
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.5e-110 403.7 347 59.1
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.9e-110 403.3 363 59.5
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 2.5e-110 402.9 340 59.7
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 2.5e-110 402.9 337 61.1
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 3.3e-110 402.5 317 63.4
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 3.3e-110 402.5 363 59.5
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 4.3e-110 402.1 347 58.8
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 7.4e-110 401.4 341 61.9
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 2.2e-109 399.8 349 59.6
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.8e-109 399.4 351 59.5
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 3.7e-109 399.1 352 57.7
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.1e-108 397.5 353 59.2
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 4.1e-108 395.6 349 58.2
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 6.9e-108 394.8 331 58.0
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 9.0e-108 394.4 361 55.1
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 9.0e-108 394.4 343 58.9
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 2.0e-107 393.3 331 59.5
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 2.0e-107 393.3 347 57.3
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 3.4e-107 392.5 351 55.8
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 2.2e-106 389.8 330 60.9
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 2.9e-106 389.4 345 57.7
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 5.0e-106 388.7 351 56.7
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 5.0e-106 388.7 346 58.1
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 6.5e-106 388.3 240 74.2
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 1.9e-105 386.7 347 55.6
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.9e-105 386.7 347 57.6
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 2.5e-105 386.3 356 56.7
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 2.5e-105 386.3 268 68.3
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 3.2e-105 386.0 337 58.8
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 5.5e-105 385.2 345 58.0
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 7.2e-105 384.8 367 55.9
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 7.2e-105 384.8 337 56.4
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 9.4e-105 384.4 351 57.0
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.2e-104 384.0 336 56.2
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 1.6e-104 383.6 374 55.3
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 2.1e-104 383.3 340 59.1
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 3.6e-104 382.5 242 72.7
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 4.6e-104 382.1 359 56.8
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 1.0e-103 380.9 342 58.5
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 1.0e-103 380.9 353 55.8
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 3.0e-103 379.4 339 58.1
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 5.1e-103 378.6 303 62.7
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 8.8e-103 377.9 338 58.0
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 8.8e-103 377.9 301 61.8
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 1.1e-102 377.5 247 72.1
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.5e-102 376.3 240 72.5
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.5e-102 376.3 325 58.2
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 5.7e-102 375.2 340 55.6
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 5.7e-102 375.2 262 67.9
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 7.4e-102 374.8 317 58.4
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 9.7e-102 374.4 240 72.1
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 9.7e-102 374.4 335 57.0
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 9.7e-102 374.4 353 55.0
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 9.7e-102 374.4 374 52.4
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 1.3e-101 374.0 343 56.9
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 2.8e-101 372.9 259 67.2
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 6.3e-101 371.7 347 54.5
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.8e-100 370.2 314 60.5
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 3.1e-100 369.4 339 55.2
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 7.7e-99 364.8 348 56.0
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 1.0e-98 364.4 419 48.7
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 2.9e-98 362.8 335 54.3
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.7e-96 356.3 242 67.4
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 4.7e-96 355.5 340 54.7
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 6.1e-96 355.1 325 52.3
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.4e-95 354.0 243 66.7
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.8e-95 353.6 335 54.6
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 3.0e-95 352.8 334 53.9
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.0e-95 352.8 389 48.6
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 6.7e-95 351.7 243 64.6
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 2.6e-94 349.7 240 69.2
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 3.3e-94 349.4 245 64.5
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.3e-94 349.4 332 55.1
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 9.7e-94 347.8 334 53.6
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 2.8e-93 346.3 238 67.6
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 1.4e-92 344.0 244 66.0
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 1.4e-92 344.0 252 63.9
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 7.0e-92 341.7 299 58.2
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 1.5e-91 340.5 271 59.8
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 2.6e-91 339.7 327 54.4
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 3.5e-91 339.3 343 54.2
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.5e-91 339.3 243 65.0
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 3.5e-91 339.3 301 57.5
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 7.7e-91 338.2 297 56.9
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.0e-90 337.8 238 65.5
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 1.3e-90 337.4 240 65.0
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 2.9e-90 336.3 245 66.5
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 5.0e-90 335.5 202 76.2
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.5e-89 334.0 248 63.7
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 4.2e-89 332.4 237 64.6
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 4.2e-89 332.4 252 64.7
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 1.2e-88 330.9 331 53.5
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 5.2e-87 325.5 327 53.5
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 8.8e-87 324.7 223 65.5
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 5.7e-86 322.0 243 62.6
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 4.1e-84 315.8 244 62.3
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.7e-83 311.6 375 48.3
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.5e-81 307.4 258 60.5
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 4.7e-80 302.4 245 60.0
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 2.0e-78 297.0 179 74.9
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 4.4e-78 295.8 212 66.5
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 7.5e-78 295.0 185 72.4
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 7.5e-78 295.0 334 49.1
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 2.2e-77 293.5 178 74.7
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 2.5e-73 280.0 281 53.4
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 2.5e-73 280.0 202 64.4
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 5.5e-73 278.9 184 70.7
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.6e-72 277.3 178 69.7
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 1.0e-71 274.6 180 72.8
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.9e-58 229.9 131 76.3
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 1.2e-56 224.6 234 48.3
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 3.7e-53 213.0 243 46.1
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 4.9e-53 212.6 230 50.4
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 3.1e-47 193.4 243 41.2
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 8.3e-45 185.3 114 70.2
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 1.1e-44 184.9 220 46.4
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.1e-44 182.2 108 75.0
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 4.0e-39 166.4 103 71.8
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 7.6e-38 162.2 206 43.2
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.1e-32 144.1 99 64.6
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 2.8e-32 143.7 99 69.7
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 3.4e-30 136.7 75 77.3
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.8e-27 125.6 169 46.7
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 4.0e-23 113.2 122 52.5
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 7.6e-22 109.0 68 72.1
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 1.9e-20 104.4 67 70.1
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.7e-19 100.5 169 37.3
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 2.3e-18 97.4 95 53.7
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.5e-17 94.7 105 45.7
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 2.5e-17 94.0 95 52.6
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.3e-16 91.7 57 73.7
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 4.0e-15 86.7 65 58.5
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.9e-12 77.8 142 31.7
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 2.4e-12 77.4 177 27.1
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.4e-12 77.4 47 70.2
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 4.2e-12 76.6 65 53.8
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 3.5e-11 73.6 145 36.6
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.3e-10 71.6 187 28.9
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 2.3e-10 70.9 201 25.9
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 3.0e-10 70.5 63 54.0
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 5.1e-10 69.7 196 27.6
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 8.7e-10 68.9 164 26.8
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 5.6e-09 66.2 131 36.6
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 9.6e-09 65.5 37 81.1
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 3.7e-08 63.5 48 58.3
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 3.7e-08 63.5 193 26.4
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 1.1e-07 62.0 167 28.1
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 6.9e-07 59.3 150 30.0
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 9.0e-07 58.9 190 25.3
Pp3c6_18380 Physcomitrium patens HOM05D001201 ORTHO05D001100 2.6e-06 57.4 185 26.5
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 7.6e-06 55.8 140 27.1
CDE04G2311 Ceratophyllum demersum HOM05D007129 ORTHO05D008680 1.0e-05 55.5 169 27.8


User provided reference genes

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