Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 2.9e-246 855.1 544 100.0
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 4.7e-233 811.2 544 93.4
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.4e-208 729.9 545 87.2
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 6.9e-200 701.0 544 84.9
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.8e-192 676.4 544 82.2
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 3.9e-187 658.7 544 81.1
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 3.3e-186 655.6 552 75.7
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.7e-185 653.3 548 81.9
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.8e-185 652.5 565 76.5
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 2.8e-185 652.5 550 81.6
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 3.7e-185 652.1 548 81.2
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 3.1e-184 649.0 550 80.7
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 3.1e-184 649.0 550 80.7
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 6.3e-169 598.2 550 73.8
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 5.9e-167 591.7 543 71.8
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 2.7e-164 582.8 551 69.7
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 9.8e-162 574.3 537 75.0
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 9.8e-162 574.3 552 69.9
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.7e-159 566.2 547 69.8
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.7e-158 563.5 553 67.5
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.7e-158 563.5 550 68.2
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 5.0e-158 562.0 553 68.2
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.5e-157 560.5 551 65.5
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-156 557.4 549 63.9
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.6e-156 555.8 550 65.8
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.4e-155 553.9 551 68.2
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 3.0e-155 552.7 547 62.3
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 5.2e-155 552.0 547 67.3
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.5e-154 550.4 550 67.3
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 3.4e-154 549.3 567 64.7
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.7e-153 547.0 557 66.4
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-152 543.5 551 63.2
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.1e-152 542.3 547 66.9
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 7.0e-152 541.6 553 62.2
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.0e-151 540.0 559 61.7
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.0e-150 537.7 547 69.5
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.7e-150 537.0 552 68.1
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 2.3e-150 536.6 547 61.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.9e-149 533.5 551 67.9
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 2.5e-149 533.1 552 66.8
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.3e-149 532.7 593 65.3
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.3e-149 532.7 593 65.3
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.2e-148 530.8 550 66.0
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.2e-148 530.8 560 70.9
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.2e-148 530.8 557 71.8
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.2e-148 530.8 559 71.2
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.8e-148 529.6 551 60.4
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 3.6e-148 529.3 553 65.8
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.8e-147 526.9 544 68.0
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 3.1e-147 526.2 551 64.1
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.2e-146 524.2 547 62.2
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.5e-146 523.9 552 68.7
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.0e-146 523.5 557 63.6
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.4e-146 522.7 551 68.2
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 3.4e-146 522.7 559 65.3
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.1e-144 517.7 534 64.2
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.1e-144 517.7 582 65.1
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.4e-144 517.3 553 60.2
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 3.2e-144 516.2 534 68.4
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 6.0e-143 511.9 543 66.7
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 6.0e-143 511.9 543 66.7
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 7.8e-143 511.5 551 63.9
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 7.8e-143 511.5 549 66.7
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 6.6e-142 508.4 560 64.1
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.5e-141 507.3 547 64.9
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 3.3e-141 506.1 568 65.3
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.3e-141 506.1 549 65.6
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 3.3e-141 506.1 576 61.5
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 4.3e-141 505.8 554 65.7
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.8e-140 503.1 550 62.2
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.1e-139 501.1 549 63.2
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.4e-139 500.7 549 65.0
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.5e-138 497.3 552 58.2
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 2.0e-138 496.9 554 60.6
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.7e-137 492.7 552 61.8
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.3e-137 491.5 544 56.1
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.6e-135 487.3 562 66.2
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.5e-135 486.1 534 63.3
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 6.0e-135 485.3 551 63.7
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 6.0e-135 485.3 515 68.5
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 3.3e-133 479.6 550 60.7
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 5.6e-133 478.8 510 62.4
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 7.3e-133 478.4 551 62.3
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 3.1e-131 473.0 510 61.8
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.6e-130 469.9 538 68.2
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 5.8e-130 468.8 557 59.6
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 9.9e-130 468.0 519 64.7
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.3e-129 467.6 492 66.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.7e-129 467.2 550 63.1
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.2e-128 463.0 558 61.6
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.2e-127 461.1 567 55.6
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 3.5e-127 459.5 551 63.3
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.7e-126 457.2 549 63.8
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 3.0e-126 456.4 518 65.1
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.1e-125 454.5 363 73.8
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.5e-125 454.1 548 56.4
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.3e-125 453.0 592 53.4
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 6.2e-124 448.7 502 58.6
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 6.2e-124 448.7 581 56.1
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 4.0e-123 446.0 589 57.2
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 4.9e-121 439.1 549 57.0
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 4.9e-121 439.1 559 52.8
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.4e-120 436.8 549 50.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 2.4e-120 436.8 544 57.4
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.2e-119 434.5 546 52.0
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.7e-119 433.3 585 52.5
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 8.7e-118 428.3 567 55.7
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 3.4e-114 416.4 556 58.3
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 9.9e-114 414.8 503 65.4
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.9e-113 413.3 577 50.1
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.1e-112 411.4 560 57.9
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.4e-107 393.7 847 40.5
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.3e-105 387.9 491 57.4
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.2e-103 381.3 473 61.3
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.1e-103 380.6 553 53.3
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.1e-103 380.6 519 52.4
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 4.6e-103 379.4 477 63.5
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 7.6e-98 362.1 555 54.1
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 2.5e-96 357.1 560 49.8
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.1e-96 355.5 573 47.5
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.3e-94 351.3 561 49.7
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.9e-93 347.4 550 43.6
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 9.6e-93 345.1 328 60.4
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 9.6e-93 345.1 446 65.0
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.1e-92 344.0 550 47.8
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.8e-92 342.8 551 45.2
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.1e-91 340.1 549 45.0
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.9e-91 339.0 551 45.0
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.0e-91 338.6 550 44.9
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.8e-90 335.9 549 44.6
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 2.2e-89 334.0 416 61.8
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 2.2e-89 334.0 545 42.0
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 2.8e-84 317.0 528 53.8
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 6.9e-83 312.4 557 40.6
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.9e-80 304.3 557 40.4
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.1e-77 295.0 372 65.3
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 9.7e-77 292.0 355 54.9
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 3.7e-76 290.0 195 71.3
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.0e-74 284.3 427 46.4
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 4.7e-71 273.1 326 70.9
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.2e-66 258.5 378 63.2
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 2.6e-66 257.3 313 55.0
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.1e-59 233.8 312 48.4
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.7e-55 220.7 508 37.6
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.8e-54 218.0 372 57.5
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-52 211.8 224 59.4
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.3e-41 174.5 295 47.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.1e-39 167.9 182 70.9
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.7e-36 157.1 181 76.8
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-33 147.1 246 40.7
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 6.8e-30 136.3 98 64.3
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.3e-24 117.1 89 80.9
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.4e-19 102.1 214 42.1
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 7.1e-19 99.8 136 40.4
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 2.1e-18 98.2 284 34.2
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.8e-18 96.3 315 28.6
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.3e-17 95.5 72 68.1
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 8.6e-17 92.8 52 78.8
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 2.8e-15 87.8 164 47.0
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.8e-15 87.8 114 52.6
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.1e-14 85.9 215 42.3
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 6.8e-14 83.2 74 60.8
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 6.8e-14 83.2 74 60.8
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.5e-13 82.0 54 79.6
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.5e-13 82.0 112 53.6
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.5e-13 82.0 74 59.5
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.9e-11 75.1 115 50.4
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.1e-11 73.9 137 29.9
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 9.2e-11 72.8 64 60.9
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.6e-10 72.0 53 54.7
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.6e-10 70.5 101 47.5
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 6.0e-10 70.1 64 59.4
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.3e-09 68.2 207 34.3
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.1e-09 67.0 244 34.0
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.1e-09 67.0 206 35.9
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 6.2e-07 60.1 95 46.3


User provided reference genes

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