Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G18050 Arabidopsis thaliana HOM05D008420 ORTHO05D009795 1.8e-130 469.2 225 100.0
AL2G13960 Arabidopsis lyrata HOM05D008420 ORTHO05D009795 1.4e-34 150.6 96 78.1
AL6G32670 Arabidopsis lyrata HOM05D008420 ORTHO05D009795 1.1e-31 141.0 96 72.9
AT3G30370 Arabidopsis thaliana HOM05D008420 ORTHO05D009795 9.7e-31 137.9 96 69.8
AL1G30400 Arabidopsis lyrata HOM05D002594 ORTHO05D011495 2.0e-20 103.6 68 76.5
CARHR218510 Cardamine hirsuta HOM05D008420 ORTHO05D009795 5.1e-16 89.0 70 58.6
Sp6g08490 Schrenkiella parvula HOM05D008420 ORTHO05D009795 5.3e-13 79.0 92 43.5
Sp2g07510 Schrenkiella parvula HOM05D008420 ORTHO05D015376 9.1e-13 78.2 93 44.1
Sp3g32500 Schrenkiella parvula HOM05D008420 ORTHO05D009795 1.0e-11 74.7 88 43.2
SpUn0117_0030 Schrenkiella parvula HOM05D008420 ORTHO05D009795 1.3e-11 74.3 92 44.6
Thhalv10011148m.g Eutrema salsugineum HOM05D008420 ORTHO05D009795 2.2e-11 73.6 98 42.9
Aa31LG7G12240 Aethionema arabicum HOM05D000017 ORTHO05D009795 8.5e-11 71.6 102 38.2
Sp3g25190 Schrenkiella parvula HOM05D008420 ORTHO05D009795 8.5e-11 71.6 105 40.0
Aa31LG8G10710 Aethionema arabicum HOM05D000017 ORTHO05D009795 1.5e-10 70.9 97 41.2
Aa31LG9G5040 Aethionema arabicum HOM05D000017 ORTHO05D009795 1.5e-10 70.9 102 37.3
Aa31sc376G20 Aethionema arabicum HOM05D000017 ORTHO05D009795 1.5e-10 70.9 102 38.2
BolC5t32252H Brassica oleracea HOM05D008420 ORTHO05D009795 2.5e-10 70.1 97 39.2
Thhalv10022508m.g Eutrema salsugineum HOM05D008420 ORTHO05D009795 2.5e-10 70.1 99 40.4
PGR044G2151 Punica granatum HOM05D002594 ORTHO05D003499 5.5e-10 68.9 60 53.3
Aa31sc24G120 Aethionema arabicum HOM05D000017 ORTHO05D009795 1.2e-09 67.8 102 38.2
Aa31csc22G160 Aethionema arabicum HOM05D000017 ORTHO05D000013 2.1e-09 67.0 102 38.2
Aa31LG4G11800 Aethionema arabicum HOM05D000017 ORTHO05D009795 2.1e-09 67.0 102 42.2
Aa31LG9G7060 Aethionema arabicum HOM05D000017 ORTHO05D000013 2.1e-09 67.0 102 38.2
HanXRQChr17g0538361 Helianthus annuus HOM05D002594 ORTHO05D003499 2.1e-09 67.0 60 51.7
Aa31LG8G12590 Aethionema arabicum HOM05D000017 ORTHO05D009795 3.6e-09 66.2 143 32.2
Thhalv10014821m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 3.6e-09 66.2 61 45.9
AT5G06520 Arabidopsis thaliana HOM05D002594 ORTHO05D019719 4.7e-09 65.9 84 42.9
Thhalv10019515m.g Eutrema salsugineum HOM05D008420 ORTHO05D009795 1.0e-08 64.7 82 45.1
Lj5g0018790 Lotus japonicus HOM05D002594 ORTHO05D003499 1.0e-08 64.7 60 48.3
Aa31sc586G40 Aethionema arabicum HOM05D000017 ORTHO05D009795 1.4e-08 64.3 102 36.3
Cc09_g04870 Coffea canephora HOM05D002594 ORTHO05D003499 1.4e-08 64.3 66 45.5
Sp5g19390 Schrenkiella parvula HOM05D008420 ORTHO05D009795 1.8e-08 63.9 110 35.5
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 1.8e-08 63.9 60 46.7
Actinidia05385 Actinidia chinensis HOM05D002594 ORTHO05D003499 2.3e-08 63.5 60 46.7
Aa31sc200G10 Aethionema arabicum HOM05D000017 ORTHO05D009795 2.3e-08 63.5 103 36.9
Aa31sc63G50 Aethionema arabicum HOM05D000017 ORTHO05D009795 2.3e-08 63.5 105 40.0
ECA233G2844 Erigeron canadensis HOM05D002594 ORTHO05D003499 2.3e-08 63.5 60 46.7
FvH4_4g07440 Fragaria vesca HOM05D002594 ORTHO05D003499 2.3e-08 63.5 59 47.5
FAN12G4354 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.3e-08 63.5 59 47.5
Lj2g0011534 Lotus japonicus HOM05D002594 ORTHO05D003499 2.3e-08 63.5 60 48.3
EL10Ac2g04712 Beta vulgaris HOM05D002594 ORTHO05D003499 3.0e-08 63.2 60 46.7
CSS0003265 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 3.0e-08 63.2 66 43.9
CSS0036069 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 3.0e-08 63.2 66 43.9
CARHR259400 Cardamine hirsuta HOM05D008420 ORTHO05D009795 3.0e-08 63.2 88 45.5
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 3.0e-08 63.2 60 48.3
MD16G1250800 Malus domestica HOM05D002594 ORTHO05D003499 3.0e-08 63.2 60 46.7
vmacro07278 Vaccinium macrocarpon HOM05D002594 ORTHO05D003499 4.0e-08 62.8 60 46.7
AUR62012173 Chenopodium quinoa HOM05D002594 ORTHO05D003499 5.2e-08 62.4 60 46.7
AUR62012853 Chenopodium quinoa HOM05D002594 ORTHO05D003499 5.2e-08 62.4 60 46.7
AUR62022810 Chenopodium quinoa HOM05D002594 ORTHO05D003499 5.2e-08 62.4 60 46.7
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 5.2e-08 62.4 60 46.7
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 5.2e-08 62.4 60 46.7
QL09p022988 Quercus lobata HOM05D002594 ORTHO05D003499 5.2e-08 62.4 60 46.7
Sc21g0005370 Simmondsia chinensis HOM05D002594 ORTHO05D003499 5.2e-08 62.4 60 46.7
Thecc.02G311700 Theobroma cacao HOM05D002594 ORTHO05D003499 5.2e-08 62.4 60 46.7
Atru.chr4.1090 Acer truncatum HOM05D002594 ORTHO05D003499 6.7e-08 62.0 79 40.5
CiPaw.05G038700 Carya illinoinensis HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
Ca_23469_v3 Cicer arietinum L. HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
Duzib248G1457 Durio zibethinus HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 6.7e-08 62.0 59 45.8
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 6.7e-08 62.0 59 45.8
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 6.7e-08 62.0 59 45.8
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
Lsat_1_v5_gn_6_65541 Lactuca sativa HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
Nitab4.5_0002162g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 48.3
Phvul.007G037600 Phaseolus vulgaris HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
Sed0006467 Sechium edule HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
VMungo0720G1145 Vigna mungo HOM05D002594 ORTHO05D003499 6.7e-08 62.0 60 46.7
Actinidia06681 Actinidia chinensis HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 46.7
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 8.8e-08 61.6 79 41.8
ClCG06G002870 Citrullus lanatus HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 46.7
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 46.7
Dinv31273 Davidia involucrata HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 45.0
Thhalv10023887m.g Eutrema salsugineum HOM05D008420 ORTHO05D009795 8.8e-08 61.6 93 38.7
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 45.0
Lalb_Chr02g0145451 Lupinus albus HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 45.0
MBI03_g24017_MAGBIO Magnolia biondii HOM05D002594 ORTHO05D003499 8.8e-08 61.6 59 45.8
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 46.7
Potri.005G094600 Populus trichocarpa HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 46.7
Sabra05G0078300 Salix brachista HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 46.7
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 46.7
TPR.G26451 Trifolium pratense HOM05D002594 ORTHO05D003499 8.8e-08 61.6 60 48.3
BcaC07g38750 Brassica carinata HOM05D002594 ORTHO05D003499 1.1e-07 61.2 60 50.0
A08p31890 Brassica napus HOM05D002594 ORTHO05D003499 1.1e-07 61.2 60 50.0
C08p16810 Brassica napus HOM05D002594 ORTHO05D003499 1.1e-07 61.2 60 50.0
BolC8t49302H Brassica oleracea HOM05D002594 ORTHO05D003499 1.1e-07 61.2 60 50.0
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 1.1e-07 61.2 60 46.7
Rhsim03G0093900 Rhododendron simsii HOM05D002594 ORTHO05D003499 1.1e-07 61.2 60 45.0
Aa31sc110G30 Aethionema arabicum HOM05D000017 ORTHO05D009795 1.5e-07 60.8 103 33.0
Ah.15g095630 Amaranthus hybridus HOM05D002594 ORTHO05D003499 1.5e-07 60.8 60 45.0
CDE02G3426 Ceratophyllum demersum HOM05D002594 ORTHO05D003499 1.5e-07 60.8 59 45.8
Glyma.09G007700 Glycine max HOM05D002594 ORTHO05D003499 1.5e-07 60.8 60 45.0
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 1.5e-07 60.8 66 42.4
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 1.5e-07 60.8 60 45.0
Solyc04g005690.4 Solanum lycopersicum HOM05D002594 ORTHO05D003499 1.5e-07 60.8 60 46.7
PGSC0003DMG400002827 Solanum tuberosum HOM05D002594 ORTHO05D003499 1.5e-07 60.8 60 46.7
HPP92_018925 Vanilla planifolia HOM05D002594 ORTHO05D003499 1.5e-07 60.8 60 45.0
Aa31sc14G20 Aethionema arabicum HOM05D000017 ORTHO05D009795 2.0e-07 60.5 100 38.0
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 2.0e-07 60.5 60 46.7
Cfa010375 Carpinus fangiana HOM05D002594 ORTHO05D003499 2.0e-07 60.5 60 46.7
Haze_03325 Corylus avellana HOM05D002594 ORTHO05D003499 2.0e-07 60.5 60 46.7
Migut.B01299 Erythranthe guttata HOM05D002594 ORTHO05D003499 2.0e-07 60.5 60 48.3
Nitab4.5_0000688g0290 Nicotiana tabacum HOM05D002594 ORTHO05D003499 2.0e-07 60.5 60 46.7
Solyc02g081960.3 Solanum lycopersicum HOM05D002594 ORTHO05D003499 2.0e-07 60.5 60 46.7
Sopen02g026590 Solanum pennellii HOM05D002594 ORTHO05D003499 2.0e-07 60.5 60 46.7
Dinv05869 Davidia involucrata HOM05D002594 ORTHO05D003499 2.6e-07 60.1 60 43.3
Lj3g0008201 Lotus japonicus HOM05D002594 ORTHO05D003499 2.6e-07 60.1 60 43.3
Nn7g37178 Nelumbo nucifera HOM05D002594 ORTHO05D003499 2.6e-07 60.1 59 45.8
RcHm_v2.0_Chr4g0399901 Rosa chinensis HOM05D002594 ORTHO05D003499 2.6e-07 60.1 69 42.0
BcaC05g25379 Brassica carinata HOM05D002594 ORTHO05D003499 3.3e-07 59.7 60 48.3
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 3.3e-07 59.7 60 48.3
C05p12600 Brassica napus HOM05D002594 ORTHO05D003499 3.3e-07 59.7 60 48.3
BolC5t30004H Brassica oleracea HOM05D002594 ORTHO05D003499 3.3e-07 59.7 60 48.3
BraA06t24251Z Brassica rapa HOM05D002594 ORTHO05D003499 3.3e-07 59.7 60 48.3
Lalb_Chr06g0165601 Lupinus albus HOM05D002594 ORTHO05D003499 3.3e-07 59.7 64 43.8
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 3.3e-07 59.7 60 45.0
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 3.3e-07 59.7 60 45.0
TPR.G12859 Trifolium pratense HOM05D002594 ORTHO05D003499 3.3e-07 59.7 60 48.3
Aa31sc1125G30 Aethionema arabicum HOM05D000017 ORTHO05D009795 4.4e-07 59.3 103 34.0
BolC1t02098H Brassica oleracea HOM05D008420 ORTHO05D009795 4.4e-07 59.3 60 48.3
BolC1t02099H Brassica oleracea HOM05D008420 ORTHO05D009795 4.4e-07 59.3 60 48.3
BraA08t35110Z Brassica rapa HOM05D002594 ORTHO05D003499 4.4e-07 59.3 60 48.3
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 4.4e-07 59.3 60 45.0
Nitab4.5_0002208g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 4.4e-07 59.3 60 46.7
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 4.4e-07 59.3 60 45.0
Psat7g089360 Pisum sativum HOM05D002594 ORTHO05D003499 4.4e-07 59.3 60 45.0
Sopen04g001740 Solanum pennellii HOM05D002594 ORTHO05D003499 4.4e-07 59.3 60 45.0
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 4.4e-07 59.3 60 45.0
Aa31LG3G5220 Aethionema arabicum HOM05D000017 ORTHO05D009795 5.7e-07 58.9 107 35.5
Aa31sc26G100 Aethionema arabicum HOM05D008420 ORTHO05D009795 5.7e-07 58.9 98 38.8
MELO3C008151.2 Cucumis melo HOM05D002594 ORTHO05D003499 5.7e-07 58.9 60 43.3
TAR371G1001 Trochodendron aralioides HOM05D002594 ORTHO05D003499 5.7e-07 58.9 59 44.1
Cc00_g29290 Coffea canephora HOM05D002594 ORTHO05D003499 7.5e-07 58.5 60 46.7
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 7.5e-07 58.5 60 45.0
PGSC0003DMG400007322 Solanum tuberosum HOM05D002594 ORTHO05D003499 7.5e-07 58.5 60 45.0
BcaB02g06534 Brassica carinata HOM05D002594 ORTHO05D003499 9.7e-07 58.2 60 46.7
ECA233G5663 Erigeron canadensis HOM05D002594 ORTHO05D003499 9.7e-07 58.2 60 45.0
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 9.7e-07 58.2 60 43.3
Peaxi162Scf00420g00339 Petunia axillaris HOM05D002594 ORTHO05D003499 9.7e-07 58.2 59 45.8
Potri.007G070700 Populus trichocarpa HOM05D002594 ORTHO05D003499 9.7e-07 58.2 60 43.3
Aa31LG6G11580 Aethionema arabicum HOM05D002594 ORTHO05D003499 1.3e-06 57.8 60 46.7
Cpa.g.sc1346.3 Carica papaya HOM05D002594 ORTHO05D003499 1.3e-06 57.8 60 45.0
Sp1g13010 Schrenkiella parvula HOM05D002594 ORTHO05D003499 1.3e-06 57.8 60 46.7
Aa31LG1G1520 Aethionema arabicum HOM05D000017 ORTHO05D009795 1.7e-06 57.4 103 34.0
Aa31sc53G90 Aethionema arabicum HOM05D000017 ORTHO05D009795 1.7e-06 57.4 103 33.0
Psat7g003760 Pisum sativum HOM05D002594 ORTHO05D003499 1.7e-06 57.4 60 43.3
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 1.7e-06 57.4 67 37.3
Aa31LG3G5940 Aethionema arabicum HOM05D000017 ORTHO05D009795 2.2e-06 57.0 107 38.3
Medtr8g106170 Medicago truncatula HOM05D002594 ORTHO05D003499 2.2e-06 57.0 60 43.3
unitig_37.g12045 Utricularia gibba HOM05D002594 ORTHO05D003499 2.2e-06 57.0 60 43.3
SalBow8G2582 Salvia bowleyana HOM05D002594 ORTHO05D003499 2.8e-06 56.6 60 45.0
Aqoxy7G03613 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 3.7e-06 56.2 59 45.8
Sp5g16050 Schrenkiella parvula HOM05D008420 ORTHO05D009795 3.7e-06 56.2 67 44.8
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 3.7e-06 56.2 60 43.3
Aa31LG11G8300 Aethionema arabicum HOM05D000017 ORTHO05D009795 4.8e-06 55.8 88 39.8
AT1G14650 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 4.8e-06 55.8 60 45.0
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 4.8e-06 55.8 60 45.0
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 4.8e-06 55.8 60 45.0
Mapoly0053s0080 Marchantia polymorpha HOM05D002594 ORTHO05D003499 4.8e-06 55.8 59 40.7
Aa31csc509G20 Aethionema arabicum HOM05D000017 ORTHO05D009795 6.3e-06 55.5 93 34.4
Aa31sc57G40 Aethionema arabicum HOM05D000017 ORTHO05D009795 6.3e-06 55.5 97 37.1
AL6G16600 Arabidopsis lyrata HOM05D002594 ORTHO05D019719 6.3e-06 55.5 84 38.1
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 6.3e-06 55.5 60 41.7
Aa31LG5G22980 Aethionema arabicum HOM05D000017 ORTHO05D009795 8.2e-06 55.1 93 34.4
AagrBONN_evm.TU.Sc2ySwM_362.2665 Anthoceros agrestis HOM05D002594 ORTHO05D003499 8.2e-06 55.1 59 42.4


User provided reference genes

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