Gene: AT1G18050

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G18050
  • Transcript Identifier AT1G18050.1
  • Gene Type Coding gene
  • Location Chr1 : 6209962-6211588 : negative

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid AT1G18050.1
  • uniprot F4IAL8

Descriptions

  • Description SWAP/surp RNA-binding domain protein
  • Computational description SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30370.1); Has 226 Blast hits to 225 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 11; Plants - 84; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
Gene OntologymRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0071004
IBA
Gene OntologyU2-type prespliceosome1
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035967 SWAP/Surp superfamily
IPR000061 SWAP/Surp
IPR045146 Splicing factor 3A subunit 1
Mapman id Description
35.1 not assigned.annotated