Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 5.9e-208 727.2 356 100.0
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.1e-205 718.8 356 98.6
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 4.4e-203 711.1 356 97.8
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 6.1e-197 690.6 355 95.2
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.2e-194 682.2 356 94.9
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.2e-194 682.2 356 94.7
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 4.8e-194 681.0 355 94.9
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 5.4e-193 677.6 356 93.8
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 7.0e-193 677.2 368 90.8
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 1.0e-191 673.3 378 88.4
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 1.6e-189 666.0 356 91.0
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 3.6e-189 664.8 361 90.3
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 1.4e-188 662.9 355 92.1
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 4.0e-188 661.4 390 85.4
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 2.8e-186 655.2 357 89.6
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 2.4e-185 652.1 355 88.7
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 4.1e-185 651.4 357 88.8
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 5.4e-185 651.0 345 91.0
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 7.0e-185 650.6 356 90.7
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 1.2e-184 649.8 354 88.4
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.3e-183 646.4 350 88.3
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 1.3e-183 646.4 356 87.6
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.7e-183 646.0 357 88.5
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 1.7e-183 646.0 357 88.5
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 2.9e-183 645.2 357 88.2
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 5.0e-183 644.4 356 89.9
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.1e-182 643.3 354 88.4
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 1.5e-182 642.9 354 87.9
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 3.3e-182 641.7 345 89.6
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 5.6e-182 641.0 356 88.2
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.2e-181 639.8 375 87.5
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 1.2e-181 639.8 355 87.3
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 2.8e-181 638.6 356 87.4
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 1.0e-180 636.7 349 87.4
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 1.8e-180 636.0 349 87.1
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 3.1e-180 635.2 355 87.0
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 8.9e-180 633.6 354 87.6
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.5e-179 632.9 345 87.8
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 4.4e-179 631.3 353 85.8
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 5.8e-179 630.9 355 86.5
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 5.8e-179 630.9 355 85.9
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 3.7e-178 628.2 355 87.6
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 4.9e-178 627.9 355 85.9
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 6.4e-178 627.5 358 85.5
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 7.0e-177 624.0 355 85.9
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 9.2e-177 623.6 346 86.4
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 2.0e-176 622.5 356 83.7
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 5.0e-175 617.8 346 87.6
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 6.6e-175 617.5 356 84.6
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.1e-174 616.7 369 82.1
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 7.3e-174 614.0 356 84.3
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 1.1e-172 610.1 345 86.4
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 1.1e-172 610.1 385 80.3
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 1.1e-172 610.1 401 76.6
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.8e-172 609.4 347 84.4
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 2.3e-172 609.0 320 90.9
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 3.1e-172 608.6 402 75.4
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 4.4e-171 604.7 358 86.6
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.3e-170 603.2 334 88.0
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.7e-170 602.8 356 83.7
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.7e-170 602.8 356 83.7
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 4.9e-170 601.3 354 83.3
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 3.2e-169 598.6 349 83.7
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 5.4e-169 597.8 354 83.1
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 2.1e-168 595.9 355 80.6
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.7e-168 595.5 349 83.4
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 4.6e-168 594.7 352 82.1
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.3e-167 593.2 367 83.9
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.7e-167 592.8 359 80.8
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 1.9e-166 589.3 336 84.2
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 4.7e-165 584.7 308 92.9
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.8e-164 582.8 356 84.6
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 4.0e-164 581.6 360 80.3
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 4.0e-164 581.6 347 83.0
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 8.9e-164 580.5 345 82.0
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 2.9e-162 575.5 351 80.6
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.4e-161 572.4 327 85.0
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 7.1e-161 570.9 347 81.3
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 2.1e-160 569.3 410 70.7
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 7.3e-158 560.8 361 78.1
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 1.2e-155 553.5 358 81.6
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 2.0e-155 552.7 321 83.8
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 4.9e-154 548.1 346 76.9
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.1e-153 547.0 437 65.4
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 7.1e-153 544.3 359 80.5
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 2.3e-151 539.3 350 74.0
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 1.9e-150 536.2 347 74.4
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.5e-150 535.8 329 81.5
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 5.8e-147 524.6 355 75.2
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 2.2e-146 522.7 360 75.3
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 1.1e-145 520.4 355 73.0
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.4e-145 520.0 381 71.1
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 9.6e-142 507.3 368 71.5
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 2.1e-141 506.1 304 76.3
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 2.8e-141 505.8 345 73.9
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 7.9e-136 487.6 310 73.2
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 1.3e-130 470.3 289 79.9
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 2.1e-128 463.0 256 84.8
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.3e-127 460.3 240 94.2
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 7.4e-126 454.5 356 66.0
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 2.6e-123 446.0 324 64.8
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 3.4e-123 445.7 316 70.9
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.5e-118 430.3 214 98.1
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 9.0e-116 421.0 341 66.0
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 3.4e-115 419.1 228 88.6
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 5.9e-115 418.3 328 62.8
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 1.0e-114 417.5 226 88.5
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 8.5e-114 414.5 321 67.0
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 1.9e-113 413.3 239 83.7
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 3.6e-112 409.1 220 88.2
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 3.6e-112 409.1 220 88.2
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 8.8e-111 404.4 227 87.7
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 1.3e-106 390.6 346 62.1
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.4e-105 387.1 216 87.0
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.7e-101 373.6 420 49.3
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 7.7e-99 364.8 228 80.7
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 4.1e-84 315.8 221 73.3
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 5.2e-71 272.3 202 69.3
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 7.8e-67 258.5 129 96.1
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 6.2e-64 248.8 212 61.8
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 6.0e-59 232.3 264 52.3
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 4.7e-56 222.6 345 41.2
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 7.3e-49 198.7 118 79.7
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 6.2e-48 195.7 115 80.0
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 3.7e-45 186.4 124 73.4
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 1.7e-37 161.0 95 81.1
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.7e-37 161.0 117 73.5
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.9e-37 160.2 102 76.5
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 1.4e-36 157.9 83 88.0
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.4e-28 130.6 77 85.7
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.0e-27 125.9 95 67.4
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.0e-23 113.2 77 71.4
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 2.1e-19 100.9 71 69.0
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 1.3e-18 98.2 93 58.1
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 1.1e-17 95.1 76 64.5
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.5e-17 94.7 57 75.4
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.2e-16 89.4 60 71.7
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 4.5e-14 83.2 77 58.4
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 1.2e-11 75.1 54 68.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 5.1e-10 69.7 34 85.3
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 1.5e-09 68.2 31 93.5
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 7.4e-09 65.9 44 72.7
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 1.3e-08 65.1 38 81.6
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 1.3e-08 65.1 38 81.6


User provided reference genes

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